| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,440,789 – 11,440,887 |
| Length | 98 |
| Max. P | 0.959928 |
| Location | 11,440,789 – 11,440,887 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 77.25 |
| Shannon entropy | 0.46712 |
| G+C content | 0.49552 |
| Mean single sequence MFE | -31.16 |
| Consensus MFE | -22.06 |
| Energy contribution | -23.54 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11440789 98 - 21146708 AAUCGCAACGGUUUUUGGAGCCGACUGCCCGCUAAUUGUGGGUGUGUGAUUGUCCGUUGAUGCUGGCGGGUGAUGUCAGUUGUUGGGUCUUUAAUCAU .........((((...(((.(((((.((((((.....)))))).((..((..((((((......))))))..))..))...))))).)))..)))).. ( -33.80, z-score = -2.05, R) >droWil1.scaffold_181141 2357459 74 + 5303230 ------------AAUCGUAGCAGGUAAACUGC------UGGUUAUGACUCUAUGAGUGGGUGCGGGU---UGUUGUCAGU---UAAAUCUUUAAUCAU ------------...((((((((.....))))------).......((((.......)))))))(((---((..(.....---.....)..))))).. ( -12.90, z-score = 0.47, R) >droAna3.scaffold_13266 2678790 92 + 19884421 AAUCCCAACGGUUUGCGGACCCCAAUUGUGG------GUGUGGGUGAGGCUGCUGGUCGAUGCUGGCUGGUGAUGUCAGUUUCUGGCUCUUUAAUCAU ...((((((((((....))))(((....)))------)).))))(((((..((..(.....((((((.......))))))..)..)).)))))..... ( -25.80, z-score = 0.85, R) >droEre2.scaffold_4845 8160983 98 + 22589142 AAUCGCAACGGUUUUUGGAGCCGACUGCCCGCUAAUUGUGGGUGUGUGAUUGCCCGUUGAUGCUGGCGGGUGAUGUCAGUUGUUGGGUCUUUAAUCAU .........((((...(((.(((((.((((((.....)))))).((..((..((((((......))))))..))..))...))))).)))..)))).. ( -37.00, z-score = -2.65, R) >droYak2.chr2R 3586566 98 + 21139217 AAUCGCAACGGUUUUUGGAGUCGACUGCCCGCUAAUUGUGGGUGUGUGAUUGCCCGUUGAUGCUGGCGGGUGAUGUCAGUUGUUGGGUCUUUAAUCAU .........((((...(((.(((((.((((((.....)))))).((..((..((((((......))))))..))..))...))))).)))..)))).. ( -34.60, z-score = -2.31, R) >droSec1.super_1 8931147 98 - 14215200 AAUCGCAACGGUUUUUGGAGCCGACUGCCCGCUAAUUGUGGGUGUGUGAUUGCCCGUUGAUGCUGGCGGGUGAUGUCAGUUGUUGGGUCUUUAAUCAU .........((((...(((.(((((.((((((.....)))))).((..((..((((((......))))))..))..))...))))).)))..)))).. ( -37.00, z-score = -2.65, R) >droSim1.chr2R 10169141 98 - 19596830 AAUCGCAACGGUUUUUGGAGCCGACUGCCCGCUAAUUGUGGGUGUGUGAUUGCCCGUUGAUGCUGGCGGGUGAUGUCAGUUGUUGGGUCUUUAAUCAU .........((((...(((.(((((.((((((.....)))))).((..((..((((((......))))))..))..))...))))).)))..)))).. ( -37.00, z-score = -2.65, R) >consensus AAUCGCAACGGUUUUUGGAGCCGACUGCCCGCUAAUUGUGGGUGUGUGAUUGCCCGUUGAUGCUGGCGGGUGAUGUCAGUUGUUGGGUCUUUAAUCAU .........((((...(((.(((((.((((((.....)))))).((..((((((((((......))))))))))..))...))))).)))..)))).. (-22.06 = -23.54 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:58 2011