| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,396,748 – 11,396,847 |
| Length | 99 |
| Max. P | 0.944541 |
| Location | 11,396,748 – 11,396,847 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 85.73 |
| Shannon entropy | 0.24547 |
| G+C content | 0.50494 |
| Mean single sequence MFE | -33.50 |
| Consensus MFE | -26.20 |
| Energy contribution | -27.48 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11396748 99 + 21146708 AUGUGGCA--UCAUUACGCUUCCCAGGCAGAUCAAUUUGUCAUGGGAAGUCGU----GGACUUGCUCCAGCUCUGAUCCGGC-AUAAUCCUAUCAGAGUCGAUCCG .((..(((--...((((((((((((((((((....)))))).))))))).)))----))...)))..))((((((((..((.-.....)).))))))))....... ( -37.90, z-score = -3.58, R) >droAna3.scaffold_13266 7818004 104 + 19884421 AUGUGGCACAUCAUUACGCUUGCCAAGUGGAUCAAUUUGUCAUGGGAAGUCAUCGCUGGACUUGCUCCAGCUUUGAUCGGAUUGGGAACCAAUCGCAGCUGACC-- ..((((((........((((.....))))........))))))((..(((((..((((((.....))))))..))....((((((...))))))...)))..))-- ( -28.19, z-score = 0.43, R) >droEre2.scaffold_4845 8117079 94 - 22589142 AUGUGGCA--UCAUUACGCUUCCCAGCCUGAUCAAUUUGUCAUGGGAAGUCGU----GGACUUGCUCCAGCUCUGAUCCGAC-AUAAUCCUAUCAGAUCCG----- .((..(((--...((((((((((((...((((......))))))))))).)))----))...)))..))..((((((..((.-....))..))))))....----- ( -28.50, z-score = -2.13, R) >droSec1.super_1 8886090 99 + 14215200 AUGUGGCA--UCAUUACGCUUCCCAGGCUGAUCAAUUUGUCAUGGGAAGUCGU----GGACUUGCUCCAGCUCUGAUCCGGC-AUAAUCCUAUCAGUGCCGAUCCG .((..(((--...(((((((((((((((..........))).))))))).)))----))...)))..)).....((((.(((-((..........))))))))).. ( -34.20, z-score = -2.31, R) >droSim1.chr2R 10125347 99 + 19596830 AUGUGGCA--UCAUUACGCUUCCCAGGCGGAUCAAUUUGUCAUGGGAAGUCGU----GGACUUGCUCCAGCUCUGAUCCGAC-AUAAUCCUAUCAGAGCCGAUCCG .((..(((--...((((((((((((((((((....)))))).))))))).)))----))...)))..))((((((((..((.-....))..))))))))....... ( -38.70, z-score = -3.66, R) >consensus AUGUGGCA__UCAUUACGCUUCCCAGGCGGAUCAAUUUGUCAUGGGAAGUCGU____GGACUUGCUCCAGCUCUGAUCCGAC_AUAAUCCUAUCAGAGCCGAUCCG .((..(((..((...((((((((((((((((....)))))).))))))).))).....))..)))..))((((((((..((......))..))))))))....... (-26.20 = -27.48 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:57 2011