| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,370,417 – 11,370,514 |
| Length | 97 |
| Max. P | 0.549565 |
| Location | 11,370,417 – 11,370,514 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 89.09 |
| Shannon entropy | 0.15027 |
| G+C content | 0.32471 |
| Mean single sequence MFE | -21.19 |
| Consensus MFE | -19.75 |
| Energy contribution | -19.75 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11370417 97 - 21146708 UUGUGGUCUAAACAUAU-------------AUCAUUUGACUAUAAGUACAUAUUUUCUUUUAGUGGACUUGUCACUAUUUCAAGUCGAGCUCUCCACAAAGAGAGUAAAU ((((((((.........-------------.......)))))))).....((((((((((..(((((((((..(((......)))))))...)))))))))))))))... ( -22.29, z-score = -2.19, R) >droSec1.super_1 8849556 110 - 14215200 UUGUGGUCUAAACAUAUUUAUAUUAUAGACAUCAUUUGACUAUAAGUACAUAAUUUCUUUCAGUGGACUUGUCACUCUUUCAAGUCGAGCUCUCCACAAAGAGAGUAAGU ((((((((........(((((...)))))........))))))))....................((((((.........))))))..((((((......)))))).... ( -20.49, z-score = -0.42, R) >droSim1.chr2R 10096902 110 - 19596830 UUGUGGUCUAAACAUAUUUAUAUUAUAGACAUCACUUGACUAUAAGUACAUAAUUUCUUUCAGUGGACUUGUCACUAUUUCAAGUCGAGCUCUCCACAAAGAGAGUAAGU ((((((((((...(((....)))..)))))...(((((....))))).)))))............((((((.........))))))..((((((......)))))).... ( -20.80, z-score = -0.47, R) >consensus UUGUGGUCUAAACAUAUUUAUAUUAUAGACAUCAUUUGACUAUAAGUACAUAAUUUCUUUCAGUGGACUUGUCACUAUUUCAAGUCGAGCUCUCCACAAAGAGAGUAAGU ((((((((.............................))))))))....................((((((.........))))))..((((((......)))))).... (-19.75 = -19.75 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:56 2011