| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,366,180 – 11,366,273 |
| Length | 93 |
| Max. P | 0.913321 |
| Location | 11,366,180 – 11,366,273 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 75.17 |
| Shannon entropy | 0.38540 |
| G+C content | 0.42561 |
| Mean single sequence MFE | -20.32 |
| Consensus MFE | -15.32 |
| Energy contribution | -14.70 |
| Covariance contribution | -0.62 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11366180 93 - 21146708 ----AUGUGUGCCUGCCGUUUGUGUGCGCGAGUGUUGUGUAA---UUUUUAACAACAACUUUU---UUUCGAGUGUCUCUCCAUCGUGCGCUUUUACUGUUCC ----..........((.((....((((((((.((((((....---......))))))......---....(((.....)))..))))))))....)).))... ( -20.90, z-score = -1.70, R) >droSec1.super_1 8845376 97 - 14215200 AUGUAUGUGUGCCUGCCGUUUGUGUGCGCGAGUGUUGUGUAA---UUUUUAACAACAACUUUU---UUUCGAGUGUCUCUCCAUCGUGCGCUUUUACUGUUCC ..............((.((....((((((((.((((((....---......))))))......---....(((.....)))..))))))))....)).))... ( -20.90, z-score = -1.47, R) >droSim1.chr2R 10092669 97 - 19596830 AUGUAUGUGUGCCUGCCGUUUGUGUGCGCGAGUGUUGUGUAA---UUUUUAACAACAACUUUU---UUUCGAGUGUCUCUCCAUCGUGCGCUUUUACUGUUCC ..............((.((....((((((((.((((((....---......))))))......---....(((.....)))..))))))))....)).))... ( -20.90, z-score = -1.47, R) >droVir3.scaffold_12875 20381222 91 - 20611582 ----------UCCUUUUCCUCCUCUCUGUGAGUGUUGUGUAAUAUUUUUUAACAACAACUUUUUUAUUUCGAGUGCUUUGGCAGCACUCAGCACCGCUUGU-- ----------.................(((.(((((((.(((......)))...))..............(((((((.....)))))))))))))))....-- ( -18.60, z-score = -1.74, R) >consensus ____AUGUGUGCCUGCCGUUUGUGUGCGCGAGUGUUGUGUAA___UUUUUAACAACAACUUUU___UUUCGAGUGUCUCUCCAUCGUGCGCUUUUACUGUUCC ..............((.((....((((((((.((((((.............))))))((((.........)))).........))))))))....)).))... (-15.32 = -14.70 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:55 2011