| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,365,268 – 11,365,395 |
| Length | 127 |
| Max. P | 0.846715 |
| Location | 11,365,268 – 11,365,395 |
|---|---|
| Length | 127 |
| Sequences | 6 |
| Columns | 137 |
| Reading direction | forward |
| Mean pairwise identity | 71.39 |
| Shannon entropy | 0.54107 |
| G+C content | 0.42772 |
| Mean single sequence MFE | -35.37 |
| Consensus MFE | -16.45 |
| Energy contribution | -17.68 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.846715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11365268 127 + 21146708 ---UACUGAUUUUUUGGGAAAGCAAUUCGCUUUCCCAGGGAAAGUCGAGUUCAGGUAAGU-AAGGCGGCUAUCCAAAAC-----AGUCCGUUAAGCUUGUACCUACUGCCCAAAUG-GUUCCAACAUUUUCGUUUUG ---.(((((((((((((((((((.....)))))))))..))))))).)))..((((((((-..(((((((.........-----)).)))))..)))..)))))...((..(((((-.......)))))..)).... ( -33.70, z-score = -1.31, R) >droSim1.chr2R 10091740 122 + 19596830 --------UUUUUUUGGGAAAGCAAUUCGCUUUCCCAGGGAAAGUCGAGUUCAGGUAAGU-AAGGCGGCUAUCCAAAAC-----AGUCCGUUAAGCUUGUACCUACUGCCCAAAUG-GCUCCAGCAUUUUCGUUUUG --------(((((((((((((((.....)))))))))))))))..((((...((((((((-..(((((((.........-----)).)))))..)))..)))))...(((.....)-)).........))))..... ( -35.90, z-score = -1.96, R) >droSec1.super_1 8844440 130 + 14215200 UACCGAGAUUUUUUUGGGAAAGCAAUUCGCUUUCCCAGGGAAAGUCGCGUUCAGGUUAGU-AAGGCGGCUAUCCAAAAC-----AGUCCGUUAAGCUUGUACCUACUGCCCAAAUG-GCUCCAGCAUUUUCGUUUUG ...((((((((((((((((((((.....)))))))))))))))...((....((((.(((-..(((((((.........-----)).)))))..)))...))))...(((.....)-))....))..)))))..... ( -40.20, z-score = -2.42, R) >droYak2.chr2R 3506134 129 - 21139217 --UACUCACUUUUUUGGGAAAGCAGAUCGCUUUCCCGGGGAAAGUCGAGUUCAGGCAAGUUAAGGGGGCUAACCAAAAU-----UGUCCGUUAAGCUUGUACCUAUUGCCCAAAUG-GCUCCAACAUUUUCGUUUUG --.((((((((((((((((((((.....)))))))).)))))))).))))....(((((((.((.((((..........-----.)))).)).))))))).......(((.....)-)).................. ( -40.00, z-score = -1.95, R) >droEre2.scaffold_4845 8081049 134 - 22589142 -UACAGAUUUUUUUUGGGAAAGCAGAUAGCUUUCCCGGGGAAAGUCAAACUCAGGUAAGA-AAGGGGGUUGGAUAGCCCCCGUAAGUCCGUUAAGCUUGUACCUACUGCCCAAAUG-GCUACAACAUUUUCGUUUUG -....((((((((((((((((((.....))))))))))))))))))((((..(((((...-..((((((......)))))).(((((.......))))))))))...(((.....)-))............)))).. ( -47.60, z-score = -3.21, R) >droWil1.scaffold_181141 2280574 102 - 5303230 --------CAUUUUCA------UAUUUUGUUUUUG-GGGGAAAGUUAAACUCGUGUGUGU-----------ACUAAAAU-----AGUCUGC-AUAUUUAU-UUUACUAGACAAGUGUGUGUGAGCCAUUUCGUUU-- --------....((((------((((((((((..(-(((..........)))((((((..-----------((((...)-----)))..))-))))....-....).)))))))...)))))))...........-- ( -14.80, z-score = 1.09, R) >consensus ________UUUUUUUGGGAAAGCAAUUCGCUUUCCCAGGGAAAGUCGAGUUCAGGUAAGU_AAGGCGGCUAUCCAAAAC_____AGUCCGUUAAGCUUGUACCUACUGCCCAAAUG_GCUCCAACAUUUUCGUUUUG .........(((..(((((((((.....)))))))))..)))(((...(((..((((.((..(((.((((.......................))))....)))))))))..)))..)))................. (-16.45 = -17.68 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:54 2011