| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,356,740 – 11,356,831 |
| Length | 91 |
| Max. P | 0.686588 |
| Location | 11,356,740 – 11,356,831 |
|---|---|
| Length | 91 |
| Sequences | 13 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 73.44 |
| Shannon entropy | 0.55526 |
| G+C content | 0.58350 |
| Mean single sequence MFE | -31.18 |
| Consensus MFE | -16.11 |
| Energy contribution | -15.96 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.686588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11356740 91 - 21146708 GCCAUUGCCAUACCACGGAAAGGUCCAGCACCAUCAGUGCGGAAGCAUCAGAGGCCUUGCCGUGCUAGUCAGUCUGUGGUGCGCCUUCUCG------------ ......((..(((((((((...(.(.(((((..((.((((....))))..))(((...)))))))).).)..))))))))).)).......------------ ( -32.50, z-score = -1.35, R) >droSim1.chr2R 10083159 91 - 19596830 GCCAUUGCCAUACCACGGAAAGGUCCAGCACCAUCAGUGCGGAAGCAUCAGAGGCCUUGCCGUGCUACUCAGUCUGUGGUGCGCCUUCUCG------------ ......((..(((((((((..(((..(((((..((.((((....))))..))(((...)))))))))))...))))))))).)).......------------ ( -31.60, z-score = -1.11, R) >droSec1.super_1 8835852 91 - 14215200 GCCAUUGCCAUACCACGGAAAGGUCCAGCACCAUCAGUGCGGAAGCAUCAGAGGCCUUGCCGUGCUACUCAGUCUGUGGUGCGCCUUCUCG------------ ......((..(((((((((..(((..(((((..((.((((....))))..))(((...)))))))))))...))))))))).)).......------------ ( -31.60, z-score = -1.11, R) >droYak2.chr2R 3497093 91 + 21139217 GCCAUUGCCAUACCACGGAAAGGUCCAGCACCAUCAGUGCGGAAGCAUCAGAGGCCUUGCCGUGCUACUCAGUCUGUGGUGAGCUUUCUCG------------ ......((..(((((((((..(((..(((((..((.((((....))))..))(((...)))))))))))...))))))))).)).......------------ ( -32.10, z-score = -1.47, R) >droEre2.scaffold_4845 8072214 91 + 22589142 GCCAUUGCCAUACCACGGAAAGGUCCAGCACCAUCAGUGCGGAAGCAUCAGAGGCCGUGCCGUGCUACUCAGUCUGUGGUGGGCCUUCUCG------------ ......(((.(((((((((..(((..(((((..((.((((....))))..))(((...)))))))))))...)))))))))))).......------------ ( -36.20, z-score = -1.89, R) >droAna3.scaffold_13266 7776448 88 - 19884421 ------GCCAUACCACGGAAAGGUCCAGCACCAUCAGUGCGGAAGCAUCAGAGGCCUCGCCGUGCUACUCAGUCUGUGAUGUGGAACCUUCUCU--------- ------.(((((.((((((..(((..(((((..((.((((....))))..))(((...)))))))))))...)))))).)))))..........--------- ( -31.90, z-score = -1.98, R) >dp4.chr3 12017205 90 - 19779522 -----------ACCACGGAAAGGUCCAGCACCAUCAGUGCGGAAGCAUCAGAGGCCGUGCCGUGCUGCUCAGUCUAUGAUGCGACUUGUCGAUGCUUCCGC-- -----------.....(((....))).((((.....))))((((((((((.(((.(((..((((((....)))..)))..))).))).).)))))))))..-- ( -31.90, z-score = -0.83, R) >droPer1.super_44 205640 90 - 614636 -----------ACCACGGAAAGGUCCAGCACCAUCAGUGCGGAAGCAUCAGAGGCCGUGCCGUGCUGCUCAGUCUAUGAUGCGACUUGUCGAUGCUUCCGC-- -----------.....(((....))).((((.....))))((((((((((.(((.(((..((((((....)))..)))..))).))).).)))))))))..-- ( -31.90, z-score = -0.83, R) >droWil1.scaffold_181141 2268840 80 + 5303230 -----------ACCAAGGGAAGGUCCAGCACCAUCAGUGCGGAAGCAUCAAAGGCCUGGCCGUGCUGCUCAGCCUGAGAUGGGAGGCCUUG------------ -----------........((((((...(.(((((.((((....))))...((((..(((......)))..))))..)))))).)))))).------------ ( -30.00, z-score = -0.19, R) >droMoj3.scaffold_6496 21082271 80 + 26866924 -----------ACCACGGAAAGGUCCAGCACCAUCAGUGCGGAAGCAUCAGAGGUCGCGCCGUGCUGGUCAGCCUCUGAUGUGACUUAUCU------------ -----------.....(((.(((((..((((.....))))....(((((((((((.(.(((.....)))).)))))))))))))))).)))------------ ( -32.10, z-score = -2.31, R) >droVir3.scaffold_12875 20365897 80 - 20611582 -----------ACCACGGAAAGGUCCAGCACCAUCAGUGCGGAAGCAUCAAAGGUCGCGCCGUGCUGGUCAGCCUGUGGUGCGACUUGUCG------------ -----------(((((((....(.(((((((.....((((....))))....((.....))))))))).)...))))))).(((....)))------------ ( -33.40, z-score = -1.99, R) >droGri2.scaffold_15245 7142262 97 + 18325388 ------ACCAUACCACGGAAAGGUCCAGCACCAUCAGUGCGGAAGCAUCAACGGUCGCGCCGUGCUGCUCAGUCUGUGAUGGUGGUUCUGGUGCGACUUGUCA ------...........((.((((((((.(((((((..(((((((((...((((.....))))..))))...)))))..))))))).))))....)))).)). ( -34.10, z-score = -0.20, R) >anoGam1.chr2L 12762613 81 - 48795086 GCCAUCCGAAUAGUACGAACA-GUCGAGCAACUUU--CACCAGAAUGACAGGGGGCGUGAAGUGCUCUUCAAUUUAUAGCGCGC------------------- (((.(((.....((.(((...-.))).))..(.((--(....))).)...)))))).....(((((...........)))))..------------------- ( -16.00, z-score = 0.98, R) >consensus ______GCCAUACCACGGAAAGGUCCAGCACCAUCAGUGCGGAAGCAUCAGAGGCCGUGCCGUGCUACUCAGUCUGUGGUGCGCCUUCUCG____________ .............((.(((...(...(((((.....((((....))))....(((...))))))))...)..))).))......................... (-16.11 = -15.96 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:53 2011