| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,337,380 – 11,337,470 |
| Length | 90 |
| Max. P | 0.642522 |
| Location | 11,337,380 – 11,337,470 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 73.33 |
| Shannon entropy | 0.48107 |
| G+C content | 0.47084 |
| Mean single sequence MFE | -29.73 |
| Consensus MFE | -13.73 |
| Energy contribution | -14.65 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.642522 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11337380 90 - 21146708 AGCACUGGCAAUAUGAAAGCAUAUUUUAUUGCCACUUUGAUGAGCUGCCUUGCU------------GCUUUUACGCGGCGGGGGUUUCGCUCGGAUAAAAGG----- .....((((((((.............))))))))((((..(((((..(((((((------------((......))))))))).....)))))....)))).----- ( -31.32, z-score = -2.44, R) >droAna3.scaffold_13266 7755527 94 - 19884421 AGGACUGGCAAUAUGAAGGCAUAUUUUAUUGCCACUUUGAUGAUCCAAAGCACC---------CGGAGGGUAACGCGGUGGUCAGGGUAAAAAUAGGGAAGGG---- ....(((((........((((........)))).(((((......)))))((((---------((........)).)))))))))..................---- ( -23.70, z-score = -0.57, R) >droSec1.super_1 8816538 90 - 14215200 AGCACUGGCAAUAUGAAAGCAUAUUUUAUUGCCACUUUGAUGAGCUGCCCUGCU------------GCUUUUACGCGGCGGGGGGUUCGCUGGGAUAAAAGG----- (((..((((((((.............)))))))).......(((((.(((((((------------((......)))))))))))))))))...........----- ( -35.12, z-score = -3.01, R) >droSim1.chr2R 10063772 90 - 19596830 AGCACUGGCAAUAUGAAAGCAUAUUUUAUUGCCACUUUGAUGAGCUGCCCUGCU------------GCUUUUGCGCGGCGGGGGGUUCGUUGGGAUAAAAGG----- .....((((((((.............)))))))).((..(((((((.(((((((------------((......))))))))))))))))..))........----- ( -36.92, z-score = -3.34, R) >droEre2.scaffold_4845 8052496 106 + 22589142 AGCCCUGGCAAUAUGAAAGCAUAUUUUAUUGCCACUUUGAUGAGCUGCCCUGCUGCUGCUGCCGCUGCUUUUAUGCGG-AGUGGAUUCGCUGGGAUAAAAAAAAAAA ...((..((((((((....))))))......((((((((..((((.((...((....))....)).)))).....)))-)))))....))..))............. ( -31.00, z-score = -1.11, R) >droYak2.chr2R 3476975 89 + 21139217 AGCACUGGCAAUAUGAAAGCAUAUUUUAUUGCCACUUUGAUGAGCUGCCCUGCUGCUGCU------GCUUUUAUGCGG-A-UGGGU--------AUAAAAAAAAG-- .....((((((((.............))))))))((((.......(((((..((((....------........))))-.-.))))--------)......))))-- ( -20.34, z-score = 0.34, R) >consensus AGCACUGGCAAUAUGAAAGCAUAUUUUAUUGCCACUUUGAUGAGCUGCCCUGCU____________GCUUUUACGCGGCGGGGGGUUCGCUGGGAUAAAAGG_____ .....((((((((.............))))))))......((((((.(((((((......................))))))))))))).................. (-13.73 = -14.65 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:52 2011