| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,336,131 – 11,336,223 |
| Length | 92 |
| Max. P | 0.534264 |
| Location | 11,336,131 – 11,336,223 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.10 |
| Shannon entropy | 0.46838 |
| G+C content | 0.52727 |
| Mean single sequence MFE | -26.02 |
| Consensus MFE | -12.99 |
| Energy contribution | -13.46 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.534264 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11336131 92 + 21146708 GGUUAACC---AGGCCAGAGCAAAUCAAACCGAAGCCGGACAGGUUUGACUUGUAUCUGUCAUCCGUCGGCA-------UUCGAUCUCUGCUCCCUCAAUCG--- ((((....---.)))).(((((........(((((((((...((..((((........)))).)).))))).-------)))).....))))).........--- ( -26.72, z-score = -1.90, R) >droSim1.chr2R 10062553 92 + 19596830 GGUUAACC---AGGCCAGAGCAAAUCCAACCGAAGCCGGACAGGUUUGACUUGUAUCUGUCAUCCGUCGGCA-------UUCGAUCUCUGCUCCCUCAAUCG--- ((((....---.)))).(((((........(((((((((...((..((((........)))).)).))))).-------)))).....))))).........--- ( -26.72, z-score = -1.81, R) >droSec1.super_1 8815310 92 + 14215200 GGUUAACC---AGGCCAGAGCAAAUCCAACCGAAGCCGGACAGGUUUGACUUGUAUCUGUCAUCCGUCGGCA-------UUCGAUCUCUGCUCCCUCAAUCG--- ((((....---.)))).(((((........(((((((((...((..((((........)))).)).))))).-------)))).....))))).........--- ( -26.72, z-score = -1.81, R) >droYak2.chr2R 3475691 92 - 21139217 GGUUAACC---AGGCCAGAGAAAAUCCAACCAAAGCCGGACAGGUUUGACUUGUAUCUGUCAUCCGUUGGCA-------UUCAAUCUCUGCUCUCUCAAUCG--- ((((....---((..((((((.((((((((..(((((.....)))))(((........)))....))))).)-------))...))))))..))...)))).--- ( -23.70, z-score = -1.75, R) >droEre2.scaffold_4845 8051307 92 - 22589142 GGUUAACC---AGGCCAGAGAAAAUCCAACCGAAGCCGGACAGGUUUGACUUGUAUCUGUCAUCCGUCGGCA-------UUCAAUCUCUGCUCUCUCAAUCG--- ((((....---((..((((((...((.....)).(((((...((..((((........)))).)).))))).-------.....))))))..))...)))).--- ( -25.10, z-score = -1.80, R) >droAna3.scaffold_13266 7754002 100 + 19884421 GGUUAACCC--GGGCCACAGGCUGACCUGUGCCACCUGGACAGGUUUGACUUGCUCCUGUCAUCCGUCCGCACUCACCAUUCAAUCUUUGCUCUCCCAAUCU--- (((......--.(((.(((((....))))))))....((((.((..((((........)))).))))))......)))........................--- ( -27.00, z-score = -1.11, R) >droPer1.super_44 184209 99 + 614636 GGCCAACCACUGGACCACAUAGCAUCCCAGACGGGCCUGACUUCUCUGUGUCAUCUGUCCCGUCGACUGUCG------ACUCAAUCUUCGCUCGCAGAUUGUUGG (((((.....))).))...(((((.....(((((((.((((........))))...).))))))..((((((------(........)))...))))..))))). ( -26.20, z-score = -0.06, R) >consensus GGUUAACC___AGGCCAGAGAAAAUCCAACCGAAGCCGGACAGGUUUGACUUGUAUCUGUCAUCCGUCGGCA_______UUCAAUCUCUGCUCCCUCAAUCG___ ............((.(((((..............(((((...((..((((........)))).)).)))))..............))))).))............ (-12.99 = -13.46 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:51 2011