| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,331,915 – 11,332,021 |
| Length | 106 |
| Max. P | 0.759928 |
| Location | 11,331,915 – 11,332,021 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 72.99 |
| Shannon entropy | 0.49087 |
| G+C content | 0.36411 |
| Mean single sequence MFE | -20.09 |
| Consensus MFE | -11.61 |
| Energy contribution | -12.53 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.759928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11331915 106 - 21146708 UCAGAUAUUUAUGCAUUAUCACGUUUUCAUACUAGAAUUAAUGGAUAAGUAUCUCUCAUCCAACAAUAAACUGUAUUCCCGACGAAUAUGGUUGCGAAAUGCCAUA ((((((((((((.(((((((..((......))..))..))))).))))))))))..............((((((((((.....))))))))))..))......... ( -20.70, z-score = -1.63, R) >droSim1.chr2R 10058380 94 - 19596830 UCAGAUAUUUAUGCAUUAUCACGUUUUCAUACGAGAAUUAAUGGAUAAGUAUCUCUCAUACAACAAUAAA------------CGAAAAUGGCUGCGAAAUGCCAUA ..((((((((((.(((((((.(((......))).))..))))).))))))))))................------------.....(((((........))))). ( -23.50, z-score = -3.74, R) >droSec1.super_1 8811140 106 - 14215200 UCAGAUAUUUAUGCAUUGUCACGUUUUCAUACUAGAAUUAAUGGAUAAGUAUCUCUCAUACAACAAUAAACUGUAUUCACGGCGAAAAUGGCUGCGAAAUGCCAUA ((((((((((((.(((((((..((......))..))..))))).))))))))))................((((....)))).))..(((((........))))). ( -20.70, z-score = -1.09, R) >droYak2.chr2R 3471302 105 + 21139217 UCAGACGUUUAUGCAACAUCACGAUUUCAUACUUCAAUUAAUGCCAGGGUAUCUCUCAUCCGACAAUCAACUGUACUCUCAGCGAAAAUGGUUGCAAAAUGCCAU- ...(.(((((.((((((.....((.........))......(((.(((((((....................)))))))..)))......))))))))))).)..- ( -15.85, z-score = 0.28, R) >droEre2.scaffold_4845 8047042 95 + 22589142 UCAGACGCUUAU----CGCCAUUUCAUGCUACGCUAUUUCAUGCAGGAGUAUCUUUUAUCCAGCAUUGAGCUGUUUUCCCUACGAAAAUGGU------GUGCCAU- ......((....----((((((((((((((..((........))...)))))........((((.....))))..........).)))))))------).))...- ( -19.70, z-score = -0.22, R) >consensus UCAGAUAUUUAUGCAUUAUCACGUUUUCAUACUAGAAUUAAUGGAUAAGUAUCUCUCAUCCAACAAUAAACUGUAUUCCCGACGAAAAUGGUUGCGAAAUGCCAUA ..((((((((((.(((((....................))))).)))))))))).................................(((((........))))). (-11.61 = -12.53 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:50 2011