| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,919,973 – 2,920,092 |
| Length | 119 |
| Max. P | 0.612198 |
| Location | 2,919,973 – 2,920,092 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 86.05 |
| Shannon entropy | 0.23753 |
| G+C content | 0.29911 |
| Mean single sequence MFE | -17.57 |
| Consensus MFE | -14.41 |
| Energy contribution | -14.81 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612198 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2919973 119 + 23011544 CAAAAAUGGCAAAACAAAUAAUGCGAAAAAAAUAAUGGAAAUAAAAUGAAAAAUAAAAAAUUAGUGAAAAGUAGAAUUUGUUUUGACUGAAUGUCGUUGCAGUCAACAGUCGUCAGUAG ......(((((((((((((..(((........((((.......................)))).......)))..)))))))))(((((..((.(......).)).))))))))).... ( -18.76, z-score = -1.79, R) >droEre2.scaffold_4929 2967480 98 + 26641161 CAAAAAUGGCAAA-CAAAUAAUGCGAAAAAA-----GUGGA---A-------AUAAAAAAUAAGUGAAAUGUAGAAUUUGUUUUGACUGAAUGUCAUUGCAGUCAACAGUCGUC----- .....((((((((-(((((..((((....(.-----.((..---.-------........))..)....))))..))))))))((((((..........))))))...))))).----- ( -14.90, z-score = -0.63, R) >droYak2.chr2L 2915374 104 + 22324452 CAAAAAUGGCAAAACAAAUAAUGCGAAAAAA-----GUGGA----------UAUAAAAAAUAAGUGAAAAGUAGAAUUUGUUUUGACUGAAUGUCAUUGCAGUCAACAGUCGUCGGUAG ......(((((((((((((..(((.......-----.....----------...................)))..)))))))))(((((..((.(......).)).))))))))).... ( -16.48, z-score = -0.93, R) >droSec1.super_5 1078341 116 + 5866729 CAAAAAUGGCAAAACAAAUAAUGCGAAAAAAAAAACGUGGA---AAUGAAAUGUAAAAAAUAAGUGAAAAGUAGAAUUUGUUUAGACUGAAUGUCAUUGCAGUCAACAGUCGUAGGUAG .....(((((.((((((((..(((...........(((...---.)))...(((.....)))........)))..)))))))).(((((..........)))))....)))))...... ( -18.50, z-score = -1.81, R) >droSim1.chr2L 2880991 116 + 22036055 CAAAAAUGGCAAAACAAAUAAUGCGAAAAAAAAAACGUGAA---AAUGAAAUGUAAAAAAUAAGUGAAAAGUAGAAUUUGUUUUGACUGAAUGUCAUUGCAGUCAACAGUCGUAGGUAG .....((((((((((((((..(((...........(((...---.)))...(((.....)))........)))..)))))))))(((((..........)))))....)))))...... ( -19.20, z-score = -1.83, R) >consensus CAAAAAUGGCAAAACAAAUAAUGCGAAAAAAA_AA_GUGGA___AAUGAAAUAUAAAAAAUAAGUGAAAAGUAGAAUUUGUUUUGACUGAAUGUCAUUGCAGUCAACAGUCGUCGGUAG .....((((((((((((((..(((..............................................)))..)))))))))(((((..........)))))....)))))...... (-14.41 = -14.81 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:37 2011