| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,329,882 – 11,329,972 |
| Length | 90 |
| Max. P | 0.684862 |
| Location | 11,329,882 – 11,329,972 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 73.20 |
| Shannon entropy | 0.52471 |
| G+C content | 0.51942 |
| Mean single sequence MFE | -30.94 |
| Consensus MFE | -11.57 |
| Energy contribution | -11.89 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.684862 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11329882 90 - 21146708 --AUGUGCACGACUACGGCU-UCCACGGGUAUCUCCGCCUGUG-GGCCUGGCAAAUACGUCCUUGUCGG------------ACUCAUAUUUUGGGGCAUCGUUACG --..(((.((((........-.((((((((......)))))))-)((((.(.(((((.((((.....))------------))...)))))).)))).))))))). ( -31.20, z-score = -1.74, R) >droSim1.chr2R 10056402 90 - 19596830 --AUGUGCACGACUACGGCU-UCCACGGGUAUCUCCGCCUGUG-GGCCCGGCAAAUACGUCCUUGUCGG------------ACUCAUAUUUUGGGGCAUCGUUACG --..(((.((((........-.((((((((......)))))))-)((((.(.(((((.((((.....))------------))...)))))).)))).))))))). ( -33.00, z-score = -1.96, R) >droSec1.super_1 8809130 90 - 14215200 --AUGUGCACGACUACGGCU-UUCACGGGUAUCUCUGCCUGUG-GGCCCGGCAAAUACGUCCUUGUCGG------------ACUCAUAUUUUGGGGCAUCGUUACG --..(((.((((........-.(((((((((....))))))))-)((((.(.(((((.((((.....))------------))...)))))).)))).))))))). ( -31.10, z-score = -2.07, R) >droYak2.chr2R 3469161 90 + 21139217 --AUGUGCACGACUACGGCU-UCCACGGGCAUCUCCGCCUGUG-GGCCCGGCAAAUACGUCCUUGUCGG------------ACUCAUAUUUUGGGGCAUCGUUACG --..(((.((((........-.((((((((......)))))))-)((((.(.(((((.((((.....))------------))...)))))).)))).))))))). ( -35.10, z-score = -2.57, R) >droEre2.scaffold_4845 8044995 90 + 22589142 --AUGUGCACGACUACGGCU-UCCACGGGUAUCUCCGCCUGUG-GGCCCGGCAAAUACGUCCUUGUCGG------------ACUCAUAUUUUGGGGCAUCGUUACG --..(((.((((........-.((((((((......)))))))-)((((.(.(((((.((((.....))------------))...)))))).)))).))))))). ( -33.00, z-score = -1.96, R) >droAna3.scaffold_13266 7747804 79 - 19884421 ----------AUGUAUGA----GCACGGGUAUCUCCGCCUGUG-GGCCCAGCAAAUAAGUCCUUGUCGG------------ACUCAUAUUUUGGGGCAUCGUUACG ----------..((((((----.(((((((......)))))))-.((((...((((((((((.....))------------)))..)))))..)))).))).))). ( -28.60, z-score = -2.33, R) >droWil1.scaffold_181141 2234067 103 + 5303230 --AUUGCCAGCCUUGUGAGUAUGUGCUCUGGCGUCUGUCUGUG-GGCACUGCAAAUAAGUCCUUGUCAGGGCUUGUGUAAUGCUCAUAUUUUGGGGCAUCGUUACG --..((((.....(((((((((((((((.(((....)))...)-)))))((((..((((((((....)))))))))))))))))))))......))))........ ( -37.40, z-score = -2.62, R) >droGri2.scaffold_15245 7110420 103 + 18325388 UCGUUUGAGAAUCUCUAAAGGCACAUAAAACUUUCUGAGUGUGUCUCUUUGCAAAUAAGUUCUUGUCAAAA--UAUGUAAUGCAUAUAUUUU-GGGCAUCGUUAUG ..((..((((..(((.((((..........))))..)))....))))...))...........((((((((--(((((.....)))))))))-.))))........ ( -18.10, z-score = -0.59, R) >consensus __AUGUGCACGACUACGGCU_UCCACGGGUAUCUCCGCCUGUG_GGCCCGGCAAAUACGUCCUUGUCGG____________ACUCAUAUUUUGGGGCAUCGUUACG ...............(((((...(((((((......))))))).)).)))........(((((.............................)))))......... (-11.57 = -11.89 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:49 2011