| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,321,757 – 11,321,870 |
| Length | 113 |
| Max. P | 0.536539 |
| Location | 11,321,757 – 11,321,870 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 76.38 |
| Shannon entropy | 0.46139 |
| G+C content | 0.54108 |
| Mean single sequence MFE | -37.55 |
| Consensus MFE | -22.35 |
| Energy contribution | -25.55 |
| Covariance contribution | 3.20 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.536539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11321757 113 - 21146708 UUUGUGGCAGCUCCUUGGCAUAUUUCAAACGCUGCAAAUGAGUGCGGCACACGCUGCUCCUGAUGGGCAC-AGGGGCAGGGGAUG------GGGA-AUGGGAAGUGGGGAAUAUGCGGGCG .........((((....(((((((((..((((((((......))))))...(.(((((((((.......)-)))))))).)....------....-.......))..))))))))))))). ( -44.20, z-score = -2.67, R) >droSim1.chr2R 10048306 119 - 19596830 UUUGUGGCAGCUCCUUGGCAUAUUUCAAACGCUGCAAAUGAGUGCGGCACACGCUGCUCCUGACGAGCAA-AGGGGCAGGGGAAGGGGAAUGGGA-AUGGGAAGUGGGAUAUGUGCGGGCG .........((((....((((((..((...((((((......))))))...(.((((((((.........-)))))))).)..............-........))..))))))..)))). ( -39.20, z-score = -0.87, R) >droSec1.super_1 8801083 119 - 14215200 UUUGUGGCAGCUCCUUGGCAUAUUUCAAACGCUGCAAAUGAGUGCGGCACACGCUGCUCCUGACGAGCAA-AGGGGCAGGGAAAGGGGAAUGGGA-AUAGGAAGUGGGGAAUGUGUGGGCG .........((((....(((((((((..((((((((......))))))...(.((((((((.........-)))))))).)..............-.......))..))))))))))))). ( -40.30, z-score = -1.62, R) >droYak2.chr2R 3460743 120 + 21139217 UUUGUGGCAGCUCCUUGGCAUAUUUCAAACGCUGCAAAUGAGUGCGGCACACGCUGCUCCCGACAGAAAAGAGGGGUAGGUGAGGGGAAAUGGGA-AUGGAAAGUGGGGAAUGUGUGGGCG .........((((....(((((((((..((((((((......)))))).(((.((((((((.........).)))))))))).............-.......))..))))))))))))). ( -38.60, z-score = -1.30, R) >droEre2.scaffold_4845 8036625 119 + 22589142 UUUGUGGCAGCUCCUUGGCAUAUUUCAAACGCUGCAAAUGAGUGCGGCACACGCUGCUCCUGGCGGGGAA-AGGGGUCGGUGAAGGGGUGGGGGA-AUGGGAAGUGGCGAAUGUGUGGGCG ......((.((.(.((.((.((((((....((((((......))))))...(.(..(((((.((.((...-.....)).))..)))))..).)..-....)))))))).)).).))..)). ( -36.60, z-score = 0.65, R) >droWil1.scaffold_181141 2226648 103 + 5303230 UUCAUGGCAACAUUUUGGCAUAUUUCAAAUGUUACAAAUGAGU--UGCACAUAGACUCCUUGAUGGCAA--AUGUGCAGGCACAUGCACAGGACACAUUUGCAGUUA-------------- .((((((((((..((((..((((.....))))..))))...))--))).))).)).....((((.((((--((((((..((....))....).))))))))).))))-------------- ( -26.40, z-score = -0.79, R) >consensus UUUGUGGCAGCUCCUUGGCAUAUUUCAAACGCUGCAAAUGAGUGCGGCACACGCUGCUCCUGACGGGCAA_AGGGGCAGGGGAAGGGGAAUGGGA_AUGGGAAGUGGGGAAUGUGUGGGCG .........((((....(((((((((..((((((((......)))))).....((((((((..........))))))))........................))..))))))))))))). (-22.35 = -25.55 + 3.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:48 2011