| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,313,592 – 11,313,692 |
| Length | 100 |
| Max. P | 0.567598 |
| Location | 11,313,592 – 11,313,692 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 78.80 |
| Shannon entropy | 0.41220 |
| G+C content | 0.51705 |
| Mean single sequence MFE | -29.05 |
| Consensus MFE | -20.42 |
| Energy contribution | -22.95 |
| Covariance contribution | 2.53 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11313592 100 + 21146708 AGAGCUAGAGGCUCGGCUCGCUUUGCAUUUUGUAAUUUCGUGACCUUUGUGCCUGCACCGCACCACCCGAAUGUGGGUGCAGUCGCAAUAGCACCCGUAC .((((.....))))((.((((.((((.....))))....)))))).(((((.(((((((.(((.........)))))))))).)))))............ ( -33.00, z-score = -1.18, R) >droSim1.chr2R 10040115 100 + 19596830 AGAGCUAGAGGCUCGGCUCGCUUUGCAUUUUGUAAUUUCGUGACCUUUGUGCCUGCACCGCACCACCCGAAUGUGGGUGCAGUCGCAAUAGCACCCGUAC .((((.....))))((.((((.((((.....))))....)))))).(((((.(((((((.(((.........)))))))))).)))))............ ( -33.00, z-score = -1.18, R) >droSec1.super_1 8793150 100 + 14215200 AGAGCUAGAGGCUCGGCUCGCUUUGCAUUUUGUAAUUUCGUGACCUUUGUGCCUGCACCGCACCACCUGAAUGUGGGUGCAGUCGCAAUAGCACCCGUAC .((((.....))))((.((((.((((.....))))....)))))).(((((.(((((((.(((.........)))))))))).)))))............ ( -33.00, z-score = -1.11, R) >droYak2.chr2R 3452171 100 - 21139217 AGAGCUAGAGGCUCGGCUCGCUUUGCAUUUUGUAAUUUCGUGACCUUUGUGCCUGCACCGCACCACCCGAAUGUGGGUGCAGUCGCAAUAGCACCCGUAC .((((.....))))((.((((.((((.....))))....)))))).(((((.(((((((.(((.........)))))))))).)))))............ ( -33.00, z-score = -1.18, R) >droEre2.scaffold_4845 8028305 100 - 22589142 AGAGCUAGAGGCUCGGCUCGCUUUGCAUUUUGUAAUUUCGUGACCUUUGUGCCUGCACCGCACCACCCGACUGUGGGUGCAGUCGCAAUAGCACCCGUAC .((((.....))))((.((((.((((.....))))....)))))).(((((.(((((((.(((.........)))))))))).)))))............ ( -33.00, z-score = -1.04, R) >droVir3.scaffold_12875 20314425 88 + 20611582 -------GAAACCAAACA-AUGCUACUACUUGC--UCUCGCUACUGUACUGUAAAUACCAAACUAAUCCACUUUGC-UAUAAUC-UAUAGAAAGUAGUUC -------...........-..((........))--....((((((...(((((.(((.((((.........)))).-)))....-)))))..)))))).. ( -9.30, z-score = -0.54, R) >consensus AGAGCUAGAGGCUCGGCUCGCUUUGCAUUUUGUAAUUUCGUGACCUUUGUGCCUGCACCGCACCACCCGAAUGUGGGUGCAGUCGCAAUAGCACCCGUAC .((((.....))))((.((((.((((.....))))....)))))).(((((.(((((((.(((.........)))))))))).)))))............ (-20.42 = -22.95 + 2.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:47 2011