| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,299,789 – 11,299,901 |
| Length | 112 |
| Max. P | 0.500000 |
| Location | 11,299,789 – 11,299,901 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 78.54 |
| Shannon entropy | 0.39539 |
| G+C content | 0.43120 |
| Mean single sequence MFE | -31.04 |
| Consensus MFE | -18.18 |
| Energy contribution | -19.35 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 11299789 112 + 21146708 AAAAUAAAAUGAAAGCGA-------AGAGCGUUUUGCAAGCCCCACGGCUUGAGGUGGAAUUCAAAAGCAGGGUCAAAGGCACCCAAGCAAGUUGCCUUGAUCUUAGCAUGUUCUCGUA-- ..............((((-------.((((((....((((((....))))))...............((((((((((.((((.(.......).)))))))))))).)))))))))))).-- ( -33.80, z-score = -1.62, R) >droAna3.scaffold_13266 7716185 103 + 19884421 AUAGCGAAAUAUUAACAC------UUAAUUAUAUUGGUAGCCCUUUGAUUUUCCGUUUAAUUAAGGUCCAGGGUUCAA-----------AAGUUACCUUGAUCUUUGCUUGUUUU-GUGUU ...((((((((......(------(((((((...(((...............)))..))))))))...((((((....-----------.....)))))).........))))))-))... ( -18.96, z-score = -0.73, R) >droEre2.scaffold_4845 8012946 112 - 22589142 AAAAUAAAAUAAAAGCGA-------AGAGCGUUUUUCAAGCCCCACAACUUGAGGUGGAAUUCAAAAGCAGGGUCAAAGGCACCCAAGCAAGCUGCCUUGAUCUUAGCAUGUUCUCGUA-- ..............((((-------.((((((..........((((........)))).........((((((((((.((((.(.......).)))))))))))).)))))))))))).-- ( -30.20, z-score = -1.68, R) >droYak2.chr2R 3437787 119 - 21139217 AAAAUGAAAUAAAAGCAAGCAGCGCAGAGCGUUUUUCAAGCCCCACAACUUGAGGUGGAAUUCAAAAGCAGGGUCAAAGGCAGCCACGAUAGUUGCCUUGAUCUUAGCAUGUUCUCGUA-- .....................(((.(((((((..........((((........)))).........((((((((((.((((((.......)))))))))))))).)))))))))))).-- ( -34.40, z-score = -1.80, R) >droSec1.super_1 8779499 112 + 14215200 AAAAUAAAAUGAAAGCGA-------AGAGCGUUUUGCAAGCCCCACGGCUUGAGGUGGAAUUCAAAGGCAGGGUCAAAGGCACCCAAGCAAGUUGCCUUGAUCUUAGCAUGUUCUCGUA-- ..............((((-------.((((((....((((((....))))))...............((((((((((.((((.(.......).)))))))))))).)))))))))))).-- ( -33.60, z-score = -1.24, R) >droSim1.chr2R 10026370 112 + 19596830 AAAAUAAAAUGAAAGCGA-------AGAGCGUUUUGCCAGCCCCACGGCUUGAGGUGGAAUUCAAAGGCAGGGUCAAAGGCACCCAAGCAAGUUGCCUUGAUCUUAGCAUGUUCUCGUA-- ..............((((-------.((((((((..((((((....))))...))..))))......((((((((((.((((.(.......).)))))))))))).))..)))))))).-- ( -35.30, z-score = -1.59, R) >consensus AAAAUAAAAUAAAAGCGA_______AGAGCGUUUUGCAAGCCCCACGACUUGAGGUGGAAUUCAAAAGCAGGGUCAAAGGCACCCAAGCAAGUUGCCUUGAUCUUAGCAUGUUCUCGUA__ .........................(((((((..........((((........)))).........((((((((.((((((.(.......).)))))))))))).)))))))))...... (-18.18 = -19.35 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:45 2011