| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,293,123 – 11,293,217 |
| Length | 94 |
| Max. P | 0.551119 |
| Location | 11,293,123 – 11,293,217 |
|---|---|
| Length | 94 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 73.07 |
| Shannon entropy | 0.52241 |
| G+C content | 0.45981 |
| Mean single sequence MFE | -24.70 |
| Consensus MFE | -12.69 |
| Energy contribution | -13.88 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551119 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11293123 94 + 21146708 ACGUUGCUAUAAGUGCUUCAUCUUGUCU---GAAUAACAUUU--GGGGCAGGACCUAA----GUAGGAACAGAAGCAUU-UACCUCAUUUCCAUUCCUCCAGCU------------ .........((((((((((.((((((((---.((......))--.))))))))(((..----..)))....))))))))-))......................------------ ( -25.20, z-score = -1.80, R) >droSim1.chr2R 10019843 94 + 19596830 ACGUUGCUCUAAGUGCUUCAUCUUGUCU---GAAUAACAUUU--GGGGCAGGACCUAA----GUAGGAACAGAAGCAUU-UACCUCAUUUCCAUUCCCCCAGCU------------ .........((((((((((.((((((((---.((......))--.))))))))(((..----..)))....))))))))-))......................------------ ( -25.00, z-score = -1.53, R) >droSec1.super_1 8772885 94 + 14215200 ACGUUGCUCUAAGUGCUUCAUCUUGUCU---GAAUAACAUUU--GGGGCAGGACCUAA----GUAGGAACAGAAGCAUU-UACCUCAUUUCCAUUCCCCCAGCU------------ .........((((((((((.((((((((---.((......))--.))))))))(((..----..)))....))))))))-))......................------------ ( -25.00, z-score = -1.53, R) >droYak2.chr2R 3431158 94 - 21139217 ACGUUGCUCUAAGUGCUUCAUCUUGUCU---GAAUAACAUUU--GGGGCAGGACCCAA----GUAGAAACAGAAGCAUU-UACCUCAUUUCCAUUCCUCCAGCC------------ .........((((((((((.((((((((---.((......))--.)))))))).....----((....)).))))))))-))......................------------ ( -22.10, z-score = -1.17, R) >droEre2.scaffold_4845 8006458 94 - 22589142 ACGUUGUUCUAAGUGCUUCAUCUUGUCU---GAAUAACAUUU--GGGGCAGGACCGAA----GUAGGGACAGAAGCAUU-UACCUCAUUUCCAUUCCUCCAGCC------------ ....((...((((((((((.((((((((---.((......))--.))))))))((...----...))....))))))))-))...)).................------------ ( -25.30, z-score = -1.23, R) >droAna3.scaffold_13266 7709987 94 + 19884421 ACGUAUUUCUAAGUGCUUCAUCUUGUCU---GAAUAACAUUU--GGGGCAGGACCUGG----GCAGGAACAGAAGCAUU-UACCUCAUUUCCAUUCCCCCAAGU------------ .........((((((((((.((((((((---.((......))--.))))))))(((..----..)))....))))))))-))......................------------ ( -25.70, z-score = -1.33, R) >dp4.chr3 11933682 97 + 19779522 ACGUGUUCUUAAGUGCUUCAUCUUGUCU---GAAUAACAUUU--GGGGCAGGACCUGGCCAUACAGAAACAGAGGCAUU-UGCCUCAUUUCCAUCCCCCAGAC------------- ...(((((.((((........))))...---)))))...(((--((((..(((.(((......))).....(((((...-.)))))...)))...))))))).------------- ( -29.20, z-score = -1.98, R) >droPer1.super_44 145818 97 + 614636 ACGUGUUCUUAAGUGCUUCAUCUUGUCU---GAAUAACAUUU--GGGGCAGGACCUGGCCAUACAGAAACAGAGGCAUU-UGCCUCAUUUCCAUCCCCCAGAC------------- ...(((((.((((........))))...---)))))...(((--((((..(((.(((......))).....(((((...-.)))))...)))...))))))).------------- ( -29.20, z-score = -1.98, R) >droWil1.scaffold_181141 2197348 116 - 5303230 ACGCAUUCUUAAGUGCUUCAUCUUGUCUUGUGAAUAAUAUUUUUGGAGGAGGGGGCCAGCAACUGGGCUAAGAUGGAAAUUGCUACCUCUACCUCAAAACUCCCCGCCCAUCCAUC ..((((......))))(((((........))))).........((((((.(((((((........)))..(((.((.........)))))...........))))..)).)))).. ( -25.80, z-score = 0.90, R) >droMoj3.scaffold_6496 20990672 72 - 26866924 ACGCAUUCUUAAGUGCUUCAUCUUGUCU---GAAUAACAUUA--GAGGCAGG-----------CACGCCCCGCUCCAUCAUGCCGCCU---------------------------- ..((((......)))).........(((---((......)))--))(((.((-----------((...............))))))).---------------------------- ( -14.46, z-score = 0.05, R) >consensus ACGUUGUUCUAAGUGCUUCAUCUUGUCU___GAAUAACAUUU__GGGGCAGGACCUAA____GUAGGAACAGAAGCAUU_UACCUCAUUUCCAUUCCCCCAGCU____________ ...........((((((((.((((((((...((((...))))...)))))))).(((......))).....))))))))..................................... (-12.69 = -13.88 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:44 2011