| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,282,374 – 11,282,424 |
| Length | 50 |
| Max. P | 0.681837 |
| Location | 11,282,374 – 11,282,424 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 91.67 |
| Shannon entropy | 0.13490 |
| G+C content | 0.33000 |
| Mean single sequence MFE | -9.35 |
| Consensus MFE | -7.55 |
| Energy contribution | -7.55 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11282374 50 + 21146708 GACCGUUGAACUGACAAUUAACUAAGUUAGUUAAAAAUGUAUCUGCUGUC ...((((.(((((((..........)))))))...))))........... ( -7.40, z-score = -1.18, R) >droEre2.scaffold_4845 7995702 50 - 22589142 GAACGUUGAACUGACAAUUAGCCAUGUUAGUUAAAAAUGUAUCCGCUAUA ..(((((.((((((((........))))))))...))))).......... ( -11.00, z-score = -2.97, R) >droYak2.chr2R 3420376 50 - 21139217 GAUCGUUGAACUGACAAUUAGCUAUGUUAGUUAAAAAUGUAUCUGCUAUA (((((((.((((((((........))))))))...)))).)))....... ( -11.60, z-score = -2.83, R) >droSim1.chr2R 10009117 50 + 19596830 GACCGUUGAACUGACAAUUAGCUAAGUUAGUUAAAAAUGUAUCUGCUGUA ...((((.(((((((..........)))))))...))))........... ( -7.40, z-score = -0.67, R) >consensus GACCGUUGAACUGACAAUUAGCUAAGUUAGUUAAAAAUGUAUCUGCUAUA ...((((.(((((((..........)))))))...))))........... ( -7.55 = -7.55 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:44 2011