| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,914,654 – 2,914,745 |
| Length | 91 |
| Max. P | 0.897910 |
| Location | 2,914,654 – 2,914,745 |
|---|---|
| Length | 91 |
| Sequences | 10 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 66.52 |
| Shannon entropy | 0.64708 |
| G+C content | 0.36748 |
| Mean single sequence MFE | -13.36 |
| Consensus MFE | -7.17 |
| Energy contribution | -6.67 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.897910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2914654 91 - 23011544 ACUAUAAUUCAACAUUGCAAAUCUGAUAAGAUUAUAGUUGAAAUAUGGCUUUGC-UCCCCAC--UUACAAUCAUCCUCGCUGAAUCUAUUGCAU------------------ .(((((.((((((......(((((....)))))...)))))).)))))......-.......--..............((..........))..------------------ ( -11.80, z-score = -0.29, R) >droSim1.chr2L 2875659 91 - 22036055 GCUAUAAUUCAACAUUGCAAAUCUGAUAAGAUUAUAGUUGAAAUAUGGCUUCGC-ACCCCCC--UUGCCAUCAUCCUCUCUGAAACUAUUGCAU------------------ ((((((.((((((......(((((....)))))...)))))).))))))...((-(......--.)))..........................------------------ ( -15.50, z-score = -1.70, R) >droSec1.super_5 1073223 91 - 5866729 ACUAUAAUUCAACAUUGCAAAUCUGAUAAGAUUAUAGUUGAAAUAUGGCUUUGC-ACCCCCC--UUGCCAUCAUCCUCUCUGAAACUAUUGCAU------------------ ...............(((((((((....)))))((((((......((((.....-.......--..))))(((.......))))))))))))).------------------ ( -13.74, z-score = -1.23, R) >droYak2.chr2L 2910159 91 - 22324452 ACUAUAUUUCAACAUUGAAAAUCUGAUAAGAUUAUAGUUGAAAUAUGGCUUUGCUGCCUUUA--CCAUCAUCCU-CACUCUGGAUCUAUUGCAU------------------ ...((((((((((....(.(((((....))))).).))))))))))(((......)))....--.....((((.-......)))).........------------------ ( -18.30, z-score = -2.19, R) >droEre2.scaffold_4929 2962380 92 - 26641161 ACUAUAUUUCAACAUUGAAAAUCUGAUAAGAUUAUAGUUGAAAUAUGGCUUUGCUGUCCCUC--UUACCAACAUGCUCUCUGGAUCUAUUGCAU------------------ .((((((((((((....(.(((((....))))).).))))))))))))...(((.((((...--.................)))).....))).------------------ ( -17.05, z-score = -1.58, R) >droWil1.scaffold_180708 7532160 87 + 12563649 GUUAUAAUUCAACAUCGAAAAGCUGAUAAGAUUAUAGUUGAAAUAUGAGUUUGCUGCCCUAA------C---AAUUUUUUCUCUUCCCCUUUUCAG---------------- ................((((((..((..(((....(((((.......((....)).......------)---))))...)))..))..))))))..---------------- ( -11.14, z-score = -0.73, R) >droVir3.scaffold_12963 840389 106 - 20206255 GUUAUAAUUCAACAUCGAAAAGCUGAUAAGAUUAUAGUUGAAAUAUGAGUUUGUUCCU-CCAG-----CAAUAGACCACCCCCCUCUCCACCUUCCCCCUCGUCUACAACAC .(((((.(((((((((.............)))....)))))).)))))(((((((.(.-...)-----.))))))).................................... ( -10.22, z-score = -0.11, R) >droMoj3.scaffold_6500 12433198 108 - 32352404 GUUAUAAUUCAACAUCGAAAAGCUGAUAAGAUUAUAGUUGAAAUAUGAGUUUGUUCCCACCAAACACCCAAAAAUCCACCUCCACCUCCAGCUUUUGCGCUCUCGCUC---- .................((((((((......(((((.......)))))(((((.......))))).......................))))))))(((....)))..---- ( -15.30, z-score = -1.47, R) >droGri2.scaffold_15126 5661339 89 + 8399593 GUUAUAAUUCAACAUCGAAAAGCUGAUAAGAUUAUAGUUGAAAUAUGAGUUUGUUCCUCCGA------CUCGAACU-ACUUCCAUCCCCCUUACAU---------------- .(((((.(((((((((.............)))....)))))).)))))(((((.((....))------..))))).-...................---------------- ( -9.62, z-score = -0.10, R) >dp4.chr4_group4 2327910 86 + 6586962 GUUAUAAUUCAACAUCGAAAAGCUGAUAAGAUUAUAGUUGAAAUAUGAGUUUGCUGCCCUCA------CUCGCACUCGCUUUUCUCCCCCAC-------------------- ................(((((((........(((((.......)))))(..(((........------...)))..))))))))........-------------------- ( -10.90, z-score = -0.14, R) >consensus GCUAUAAUUCAACAUCGAAAAGCUGAUAAGAUUAUAGUUGAAAUAUGACUUUGCUGCCCCCA_____CCAUCAUCCUCUCUGCAUCUACUGCAU__________________ .(((((.((((((.......................)))))).)))))................................................................ ( -7.17 = -6.67 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:36 2011