| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,196,912 – 11,196,971 |
| Length | 59 |
| Max. P | 0.967648 |
| Location | 11,196,912 – 11,196,971 |
|---|---|
| Length | 59 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 94.92 |
| Shannon entropy | 0.07356 |
| G+C content | 0.36158 |
| Mean single sequence MFE | -9.87 |
| Consensus MFE | -9.30 |
| Energy contribution | -9.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.967648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11196912 59 + 21146708 CACUAUUUUCUCUCUCAGAAAUAUUCCAAUGUUCCAAUUGGAAGUUUCGCAAAUGUAAA .................(((((.(((((((......))))))))))))........... ( -11.00, z-score = -2.97, R) >droSim1.chr2R 9933980 59 + 19596830 CCCUGUUUCCUCUCUCAGAAGUAUUCCAAUGUUCCAAUUGGAAGUUUCGCAAAUGUAAA .................(((...(((((((......)))))))..)))........... ( -9.30, z-score = -1.93, R) >droSec1.super_1 8689356 59 + 14215200 CUCUGUUUCCUCUCUCAGAAGUAUUCCAAUGUUCCAAUUGGAAGUUUCGCAAAUGUAAA .((((..........))))....(((((((......)))))))................ ( -9.30, z-score = -1.81, R) >consensus CACUGUUUCCUCUCUCAGAAGUAUUCCAAUGUUCCAAUUGGAAGUUUCGCAAAUGUAAA .................(((...(((((((......)))))))..)))........... ( -9.30 = -9.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:37 2011