| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,176,215 – 11,176,331 |
| Length | 116 |
| Max. P | 0.917880 |
| Location | 11,176,215 – 11,176,331 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 96.57 |
| Shannon entropy | 0.04709 |
| G+C content | 0.26935 |
| Mean single sequence MFE | -23.31 |
| Consensus MFE | -21.46 |
| Energy contribution | -21.46 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.917880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11176215 116 - 21146708 CAGAUAACAAUAAUAUCGUAAAGA-UUUUUUUAUUCAAUUUCUUUAAAAUGAAUCACCAAUUUGUUUGUUAAUGAAUUGGGGCAGCUUUCCAUUAGUGAGUAAUCACGAUUUAUGAC ..((((.......)))).((((((-..((.......))..))))))..(((((((.((((((..((....))..))))))...............((((....)))))))))))... ( -23.70, z-score = -2.05, R) >droSec1.super_1 8668878 117 - 14215200 CAAAUAACAAUAAUAUCGUAAAGAUUUUUUUUAUUCAAUUUCUUUAAAAUGAAUCACCAAUUUGUUUGUUAAUGAAUUGGGGCAGCUCUUCAUUAGUGAGUAAUCACGAUUUAUGAC ..................((((((..((........))..))))))..(((((((.((((((..((....))..))))))...............((((....)))))))))))... ( -22.90, z-score = -1.96, R) >droSim1.chr2R 9913215 116 - 19596830 CAAAUAACAAUAAUAUCGUAAAGA-AUUUUUUAAUCAAUUUCUUUAAAAUGAAUCACCAAUUUGUUUGUUAAUGAAUUGGGGCAGCUCUUCAUUAGUGAGUAAUCACGAUUUAUGAC ..................((((((-(.............)))))))..(((((((.((((((..((....))..))))))...............((((....)))))))))))... ( -23.32, z-score = -2.25, R) >consensus CAAAUAACAAUAAUAUCGUAAAGA_UUUUUUUAUUCAAUUUCUUUAAAAUGAAUCACCAAUUUGUUUGUUAAUGAAUUGGGGCAGCUCUUCAUUAGUGAGUAAUCACGAUUUAUGAC ..................((((((................))))))..(((((((.((((((..((....))..))))))...............((((....)))))))))))... (-21.46 = -21.46 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:34 2011