| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,128,953 – 11,129,005 |
| Length | 52 |
| Max. P | 0.721347 |
| Location | 11,128,953 – 11,129,005 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 90.18 |
| Shannon entropy | 0.15684 |
| G+C content | 0.37463 |
| Mean single sequence MFE | -6.27 |
| Consensus MFE | -5.52 |
| Energy contribution | -5.52 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.721347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11128953 52 + 21146708 GCACUUAUUUACAUUUCCACGAUUUUCGUUCCUGUUCUCUGUUCUGGAACUA-------- ...........................(((((.............)))))..-------- ( -5.52, z-score = -1.15, R) >droSim1.chr2R 9866230 52 + 19596830 GCACUUAUUUACAUUUCCACGAUUUUCGUUCCUGUUCUCUGUUCUGGAACUA-------- ...........................(((((.............)))))..-------- ( -5.52, z-score = -1.15, R) >droSec1.super_1 8621184 52 + 14215200 GCACUUAUUUACAUUUCCACGAUUUUCGUUCCUGUUCUCUGUUCUGGAACUA-------- ...........................(((((.............)))))..-------- ( -5.52, z-score = -1.15, R) >droYak2.chr2R 11048385 58 + 21139217 GCAUUUAUUUACAUUUCCACGAUUUUCGUUCCUGUUC--UGUUCUGGAACUACGAAACUG .......................((((((....((((--(.....))))).))))))... ( -9.10, z-score = -2.01, R) >droEre2.scaffold_4845 7847548 50 - 22589142 GCAUUUAUUUACAUUUCCACUAUUUUCGUUCCUGUUC--UGUUCUGGAACUA-------- ...........................(((((.....--......)))))..-------- ( -5.70, z-score = -2.13, R) >consensus GCACUUAUUUACAUUUCCACGAUUUUCGUUCCUGUUCUCUGUUCUGGAACUA________ ...........................(((((.............))))).......... ( -5.52 = -5.52 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:30 2011