| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,908,191 – 2,908,242 |
| Length | 51 |
| Max. P | 0.998971 |
| Location | 2,908,191 – 2,908,242 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 71.34 |
| Shannon entropy | 0.39376 |
| G+C content | 0.38648 |
| Mean single sequence MFE | -12.90 |
| Consensus MFE | -9.33 |
| Energy contribution | -9.67 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.33 |
| Mean z-score | -3.31 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.58 |
| SVM RNA-class probability | 0.998971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2908191 51 + 23011544 --CAUCAUCACAUCGCUGGCAUUUCUUUUUGCCAGUGACCCAGAAACAUUUCU --..........(((((((((........)))))))))............... ( -15.10, z-score = -4.55, R) >droEre2.scaffold_4929 2955829 53 + 26641161 CAUCUCAUCACAUCGCUGGCAUUUCUUUUUGCCAGUGACCCAGAAACAUUUCU ............(((((((((........)))))))))............... ( -15.10, z-score = -4.55, R) >droMoj3.scaffold_6500 19901251 51 - 32352404 --UUUAGGCCAAGUAAUGGAAUUUCUUUCUGUCAAUGACCUAGAAAUUAUUUU --((((((.((....((((((.....))))))...)).))))))......... ( -8.50, z-score = -0.85, R) >consensus __UAUCAUCACAUCGCUGGCAUUUCUUUUUGCCAGUGACCCAGAAACAUUUCU ............(((((((((........)))))))))............... ( -9.33 = -9.67 + 0.34)
| Location | 2,908,191 – 2,908,242 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 71.34 |
| Shannon entropy | 0.39376 |
| G+C content | 0.38648 |
| Mean single sequence MFE | -12.67 |
| Consensus MFE | -5.35 |
| Energy contribution | -4.47 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2908191 51 - 23011544 AGAAAUGUUUCUGGGUCACUGGCAAAAAGAAAUGCCAGCGAUGUGAUGAUG-- ......(((..((.(((.((((((........)))))).))).))..))).-- ( -13.30, z-score = -2.11, R) >droEre2.scaffold_4929 2955829 53 - 26641161 AGAAAUGUUUCUGGGUCACUGGCAAAAAGAAAUGCCAGCGAUGUGAUGAGAUG ......(((((.(.(((.((((((........)))))).))).)...))))). ( -15.70, z-score = -3.05, R) >droMoj3.scaffold_6500 19901251 51 + 32352404 AAAAUAAUUUCUAGGUCAUUGACAGAAAGAAAUUCCAUUACUUGGCCUAAA-- ...........(((((((.(((..(((.....)))..)))..)))))))..-- ( -9.00, z-score = -1.53, R) >consensus AGAAAUGUUUCUGGGUCACUGGCAAAAAGAAAUGCCAGCGAUGUGAUGAAA__ .....(((((((..(((...)))....)))))))................... ( -5.35 = -4.47 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:35 2011