| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,056,227 – 11,056,325 |
| Length | 98 |
| Max. P | 0.707776 |
| Location | 11,056,227 – 11,056,325 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 84.82 |
| Shannon entropy | 0.27076 |
| G+C content | 0.42295 |
| Mean single sequence MFE | -21.22 |
| Consensus MFE | -15.52 |
| Energy contribution | -15.15 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11056227 98 + 21146708 UUGGCCAUUUGUCUAACGCUGCGACACC---GUAUUCAAUUAAAUAUUGAAAGACGUGGCUAAUAAAUUACCCAAAC-----------GCAAACGCCAAGCCGGACACAAUA---- ((((((((..((((.....((((....)---)))((((((.....)))))))))))))))))).......((.....-----------((....))......))........---- ( -19.90, z-score = -1.04, R) >droSim1.chr2R 9794709 98 + 19596830 UUGGCCAUUUGUCUAACGCUGCGACACC---GUAUUCAAUUAAAUAUUGAAAGACGUGGCUAAUAAAUUACCCAAAC-----------GCAAACGCCAACCCGGACACAAUA---- ((((((((..((((.....((((....)---)))((((((.....)))))))))))))))))).......((.....-----------((....))......))........---- ( -19.90, z-score = -1.46, R) >droSec1.super_1 8550295 98 + 14215200 UUGGCCAUUUGUCUAACGCUGCGACACC---GUAUUCAAUUAAAUAUUGAAAGACGUGGCUAAUAAAUUACCCAAAC-----------GCAAACGCCAAGCCGGACACAAUA---- ((((((((..((((.....((((....)---)))((((((.....)))))))))))))))))).......((.....-----------((....))......))........---- ( -19.90, z-score = -1.04, R) >droYak2.chr2R 10977414 98 + 21139217 UUGGCCAUUUGUCUAACGCUGCGACACC---GUAUUCAAUUAAAUAUUGAAAGACGUGGCUAAUAAAUUACCCAAAC-----------GCAAACGCCAAGCCGAACACAAUG---- ((((((((..((((.....((((....)---)))((((((.....))))))))))))))))))..............-----------((....))................---- ( -19.20, z-score = -1.30, R) >droEre2.scaffold_4845 7771551 98 - 22589142 UUGGCCAUUUGUCUAACGCUGCGACACC---GUAUUCAAUUAAAUAUUGAAAGACGUGGCUAAUAAAUUACCCAAAG-----------GCAAACGCCAAGCCGAACACAAUG---- ((((((((..((((.....((((....)---)))((((((.....)))))))))))))))))).............(-----------((....)))...............---- ( -23.30, z-score = -2.32, R) >droAna3.scaffold_13266 17591568 100 - 19884421 UUGGCCAUUUGUCUAACGCUGCGACACCACCGUAUUCAAUUAAAUAUUGAAAGACGUGGCUAAUAAAUUACCCAA-C-----------GGAAACGCAAGCCCAAACACAAAU---- ((((((((..((((.....((((.......))))((((((.....))))))))))))))))))............-(-----------(....)).................---- ( -21.60, z-score = -2.30, R) >dp4.chr3 14341468 107 - 19779522 CUGGCCAUUUGUCUGGCCCUGCGACACC---GUAUUCAAUUAAAUAUUGAAAGACAUGGCCAAUAAAUUACCCAACAC------GAACACGAACGCCAAAUGGAAUACCAAACCAG (((((((((((.((((((.((((....)---)))((((((.....))))))......)))))...............(------(....))...).))))))).........)))) ( -23.00, z-score = -2.34, R) >droPer1.super_2 3398770 113 - 9036312 CUGGCCAUUUGUCUGGCCCUGCGACACC---GUAUUCAAUUAAAUAUUGAAAGACAUGGCCAAUAAAUUACCCAACACCAACACGAACACGAACGCCAAAUGGAAUACCAAACCAG (((((((((((.((((((.((((....)---)))((((((.....))))))......))))).....................((....))...).))))))).........)))) ( -23.00, z-score = -2.23, R) >consensus UUGGCCAUUUGUCUAACGCUGCGACACC___GUAUUCAAUUAAAUAUUGAAAGACGUGGCUAAUAAAUUACCCAAAC___________GCAAACGCCAAGCCGAACACAAUA____ .(((((((..((((.........((......)).((((((.....)))))))))))))))))...................................................... (-15.52 = -15.15 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:24 2011