| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,051,415 – 11,051,514 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 11,051,415 – 11,051,514 |
|---|---|
| Length | 99 |
| Sequences | 11 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 86.55 |
| Shannon entropy | 0.26810 |
| G+C content | 0.36206 |
| Mean single sequence MFE | -17.18 |
| Consensus MFE | -14.99 |
| Energy contribution | -14.70 |
| Covariance contribution | -0.29 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 11051415 99 + 21146708 ACAUCACCAUCAUCAUCAUGGCAGCAAAAAAUUCCAUCGAAAUCCCUUGAAAAAUUUGGAUCUCGAUUUUAAAUUCGAUGUCAAUUCGUUUUAGCCAAC------------------- ..................((((.............(((((.((((.((....))...)))).)))))..((((..(((.......))).))))))))..------------------- ( -16.40, z-score = -1.16, R) >droSim1.chr2R 9789749 99 + 19596830 ACAUCACCAUCAUCACCAUGGCAGCAAAAAAUUCCAUCGAAAUCCCUUGAAAAAUUUGGAUCUCGAUUUUAAAUUCGAUGUCAAUUCGUUUUAGCCAAC------------------- ..................((((.............(((((.((((.((....))...)))).)))))..((((..(((.......))).))))))))..------------------- ( -16.40, z-score = -1.24, R) >droSec1.super_1 8545370 99 + 14215200 ACAUCACCAUCAUCACCAUGGCAGCAAAAAAUUCCAUCGAAAUCCCUUGAAAAAUUUGGAUCUCGAUUUUAAAUUCGAUGUCAAUUCGUUUUAGCCAAC------------------- ..................((((.............(((((.((((.((....))...)))).)))))..((((..(((.......))).))))))))..------------------- ( -16.40, z-score = -1.24, R) >droYak2.chr2R 10972206 99 + 21139217 ACAUCACCAUCAUCAUCACGGCAGCAAAAAAUUCCAUCGAAAUCCCUUGAAAAAUUUGGAUCUCGAUUUUAAAUUCGAUGUCAAUUCGUUUUAGCCAAC------------------- ...................(((.............(((((.((((.((....))...)))).)))))..((((..(((.......))).)))))))...------------------- ( -15.70, z-score = -1.09, R) >droEre2.scaffold_4845 7766514 99 - 22589142 ACAUCACCAUCAUCAUCAUGGCAGCAAAAAAUUCCAUCGAAAUCCCUUGAAAAAUUUGGAUCUCGAUUUUAAAUUCGAUGUCAAUUCGUUUUAGCCAAC------------------- ..................((((.............(((((.((((.((....))...)))).)))))..((((..(((.......))).))))))))..------------------- ( -16.40, z-score = -1.16, R) >droAna3.scaffold_13266 17586774 99 - 19884421 ACAUCACCAUCAUCAUCAUGGCAGCAAAAAAAUCCGUCGAAAUCCGUUGAAAAAUUUGGAUCUCGACUUUAAAUUCGAUGUCAAUUCGUUUUAGCCAAC------------------- ..................((((.............(((((.(((((((....)))..)))).)))))..((((..(((.......))).))))))))..------------------- ( -20.60, z-score = -2.16, R) >dp4.chr3 14336086 99 - 19779522 ACAUCACCACCAUCACCAUGGCAGCCAGAAAUUCCGUCGAAAUCCGUUGAAAAAUUUGGAUCUCGAUUUUAAAUUCGAUGUUAAUUCGUUUUAGCCAAC------------------- ..................((((.............(((((.(((((((....)))..)))).)))))..((((..(((.......))).))))))))..------------------- ( -18.20, z-score = -1.02, R) >droPer1.super_2 3393336 99 - 9036312 ACAUCACCACCAUCACCAUGGCAGCCAGAAAUUCCGUCGAAAUCCGUUGAAAAAUUUGGAUCUCGAUUUUAAAUUCGAUGUUAAUUCGUUUUAGCCAAC------------------- ..................((((.............(((((.(((((((....)))..)))).)))))..((((..(((.......))).))))))))..------------------- ( -18.20, z-score = -1.02, R) >droWil1.scaffold_180699 2474635 118 + 2593675 ACAUCACCAUCAUCAUCAUGGCAGCAAGAAAAUUCGACGAAAUCCCUUGAAAAAUUUGGAUCUUGAUUUUAAAUUUGAUGUUAAUUCGUUUUAACCGAAUCGAAAUUAAAAUUACAAC ......(((......(((.((......((....)).........)).)))......)))....(((((((((.(((((((((((......)))))...)))))).))))))))).... ( -15.26, z-score = 0.80, R) >droMoj3.scaffold_6496 9760492 117 - 26866924 ACAUCACCAUCAUCAUCAUGGCAGCAAGAAAAUCCGUCGAAAUCCUUUGAAAAACUUGGAUCUCGAUUUUAAAUUCGAUGUUAAUUCGUUUUAGCCAGCACUCAAAUUUACCACAAC- ..................((((.............(((((.((((.((....))...)))).)))))..((((..(((.......))).))))))))....................- ( -17.40, z-score = -0.61, R) >droVir3.scaffold_12875 9929300 117 + 20611582 ACAUCACCAUCAUCAUCAUGGCAGCAAGAAAUUCCAUCGAAAUCCGUUGAAAAAUUUGGAUCUCGAUUUUAAAUUCGAUGUUAAUUCGUUUUAGCCAGCACUAAAUGUAACAACAAC- (((((.((((.......))))......(((.((..(((((.(((((((....)))..)))).)))))...)).))))))))........(((((......)))))............- ( -18.00, z-score = -0.41, R) >consensus ACAUCACCAUCAUCAUCAUGGCAGCAAAAAAUUCCAUCGAAAUCCCUUGAAAAAUUUGGAUCUCGAUUUUAAAUUCGAUGUCAAUUCGUUUUAGCCAAC___________________ ..................((((.............(((((.((((............)))).)))))..((((..(((.......))).))))))))..................... (-14.99 = -14.70 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:22 2011