| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,032,644 – 11,032,762 |
| Length | 118 |
| Max. P | 0.538525 |
| Location | 11,032,644 – 11,032,762 |
|---|---|
| Length | 118 |
| Sequences | 13 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 72.92 |
| Shannon entropy | 0.61407 |
| G+C content | 0.51857 |
| Mean single sequence MFE | -29.66 |
| Consensus MFE | -17.24 |
| Energy contribution | -15.73 |
| Covariance contribution | -1.51 |
| Combinations/Pair | 1.61 |
| Mean z-score | -0.42 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.538525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11032644 118 - 21146708 AACGAAAUGCGCCCCAGGGAUCCGAUUCGUUGUCGCGAGUGUGGAUAUCGUAUCAUGUACAAAAAGCGCACCAAGCGUCGUAAGUAAUCCCUCAUAUUUACAUUAUUCCCCAGAAGUC .(((...(((((....(..(((((((((((....)))))).)))))..)((((...)))).....))))).....))).(((((((........)))))))................. ( -25.70, z-score = -0.77, R) >droSim1.chr2R 9771410 118 - 19596830 AACGAGAUGCGGCCCAGGGAUCCGAUUCGUUGUCGCGAGUGUGGAUAUCGUAUCAUGUACAAAAAGCGCACCAAGCGUCGUAAGUAAUCCUUCAUAUUUAAAUUUCCCCCCGGAAGUC .(((((((((((((...))(((((((((((....)))))).))))).)))))))............(((.....)))))))....................((((((....)))))). ( -27.20, z-score = 0.04, R) >droSec1.super_1 8527003 118 - 14215200 AACGAGAUGCGCCCAAGGGAUCCGAUUCGUUGUCGCGAGUGUGGAUAUCGUAUCAUGUACAAAAAGCGCACCAAGCGUCGUAAGUAAUCCUUCAUAUUUAAAUUUCCCCCAGGAAGUC .((((((((((((....))(((((((((((....)))))).)))))..))))))............(((.....)))))))....................((((((....)))))). ( -29.00, z-score = -1.32, R) >droYak2.chr2R 10953274 118 - 21139217 AACGAGAUGCGUCCCAGGGAUCCGAUUCGUUGUCGCGAAUGUGGCUAUCGUAUCAUGUACAAAAAACGCACCAAGCGUCGUAAGUAAUCCUUCAUAUUUACAUUCUCCCUCAGGAGAC .(((.((((((..(((.(..((((((.....)))).)).).)))....)))))).))).......((((.....)))).(((((((........)))))))..(((((....))))). ( -30.70, z-score = -1.43, R) >droEre2.scaffold_4845 7747760 118 + 22589142 AACGAGAUGCGUCCCAGGGAUCCGAUUCGUUGUCGCGAGUGUGGCUAUCGUAUCAUGUACAAAAAACGCACCAAGCGUCGUAAGUAAUCCUGCAUAUUUACAUUCCUCCCCAGAAGUC ((((((.((.((((...)))).)).))))))(.(((..(((((......((((...))))......)))))...))).)(((((((........)))))))................. ( -25.40, z-score = -0.03, R) >droAna3.scaffold_13266 17568666 105 + 19884421 AACGAGAUGCGACCACGAGAUCCGAUUCGUUGCCGUGAAUGUGGUUACCGCAUCAUGUACAAGAAGCGCACCAAGCGUCGUGAGUAUUUGUUGACCCUAGGGUCC------------- (((.((((((...(((((.......(((.(((.(((((.(((((...))))))))))..)))))).(((.....)))))))).)))))))))((((....)))).------------- ( -30.90, z-score = -1.00, R) >dp4.chr3 8899430 112 - 19779522 AAUGAGAUGCGACCACGUGACCCCAUACGUUGCCGCGAGUGCGGCUACCGCAUCAUGUACAAGAAGCGCACCAAGCGUCGUAAGUAGUCC--UCCCGGCGUCUGGCUGGGAGCC---- .....((((((...(((((......))))).(((((....)))))...))))))...(((..(..((((.....))))..)..)))...(--(((((((.....))))))))..---- ( -41.20, z-score = -1.33, R) >droPer1.super_4 2784811 112 - 7162766 AAUGAGAUGCGACCACGUGACCCCAUACGUUGCCGCGAGUGCGGCUACCGCAUCAUGUACAAGAAGCGCACCAAGCGUCGUAAGUAGUCC--UCCCGGCGUCUGGCUGGGAGCC---- .....((((((...(((((......))))).(((((....)))))...))))))...(((..(..((((.....))))..)..)))...(--(((((((.....))))))))..---- ( -41.20, z-score = -1.33, R) >droWil1.scaffold_180699 2450824 107 - 2593675 AAUGAGAUGAGAGCACGUGAUCCCAUACGUUGCCGUGAAUGUGGCUACCGCAUCAUGUACAAGAAGCGCACCAAGCGUCGUAAGUACUCAUUGUUGGAAAGAGGCGC----------- .....((((((.(((((((......)))).)))(((((.(((((...))))))))))(((..(..((((.....))))..)..)))))))))...............----------- ( -24.90, z-score = 1.11, R) >droVir3.scaffold_12875 9900964 104 - 20611582 AACGAGAUGCGUCCACGUGAUCCCAUACGCUGUCGCGAGUGUGGCUACCGUAUCAUGUACAAGAAGCGCACCAAGCGCCGUAAGUACCGAAUCUCUGGGAUGCC-------------- ........((((((((((((((((((.(((....))).))).)).......))))))).(((((.((((.....))))(....).......))).)))))))).-------------- ( -29.71, z-score = 0.02, R) >droMoj3.scaffold_6496 9733899 104 + 26866924 AACGAGAUGCGUCCACGUGAUCCCAUACGUUGCCGCGAGUGUGGCUACCGCAUCAUGUACAAGAAGCGCACCAAGCGUCGUAAGUAUUGCGGCUCCGGGGUCUC-------------- ........(((....)))((((((.......(((((....)))))..(((((....((((..(..((((.....))))..)..)))))))))....))))))..-------------- ( -32.90, z-score = 0.20, R) >droGri2.scaffold_15245 3101638 89 - 18325388 AAUGAGAUGCGUCCACGAGAUCCGAUCCGUUGUCGCGAGUGUGGCUAUCGUAUUAUGUACAAGAAGCGCACCAAGCGUCGUAAGUAGCC----------------------------- .....((((((.(((((...((((((.....)))).)).)))))....))))))...(((..(..((((.....))))..)..)))...----------------------------- ( -20.90, z-score = 0.42, R) >anoGam1.chr3L 17151816 116 + 41284009 AAUGAGAUGCGCCCGAGGGAUCCGAUCCGUUGCCGCGAGUGUGGUUACCGUAUCAUGUACAAGAAGCGUACGAAGCGACGUAAGUAG--AUGCAUUUUAAAAUUAGAAGAAGGAAGCC .......((((..(((.((((...)))).))).)))).....((((.(((((((.(((((.......))))).....((....)).)--)))).(((((....)))))...)).)))) ( -25.90, z-score = -0.05, R) >consensus AACGAGAUGCGUCCACGGGAUCCGAUUCGUUGUCGCGAGUGUGGCUACCGUAUCAUGUACAAGAAGCGCACCAAGCGUCGUAAGUAAUCCUUCAUAUUUAUAUUCC______G_____ .(((.((((((.....(((......)))((.(((((....))))).))))))))...........((((.....)))))))..................................... (-17.24 = -15.73 + -1.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:20 2011