| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,024,605 – 11,024,715 |
| Length | 110 |
| Max. P | 0.621781 |
| Location | 11,024,605 – 11,024,715 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 73.42 |
| Shannon entropy | 0.46621 |
| G+C content | 0.49898 |
| Mean single sequence MFE | -33.28 |
| Consensus MFE | -22.29 |
| Energy contribution | -23.89 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.621781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11024605 110 - 21146708 ACAUCACUAGCCCAGCAUCAUCCGCACAGAGAGACAAACUGCCAACGAUCGCGGCA--UUUUUUUUUUAUUUUGGCGGCGCUUUUGUUGUGCGGUGGGUGGGUGUGGGCUGU .......(((((((....(((((((............(((((((((((.(((.((.--................)).)))...)))))).)))))..)))))))))))))). ( -37.87, z-score = -1.21, R) >droEre2.scaffold_4845 7739650 102 + 22589142 ACACCACUAG-CCAGCAUCAUCCGCACAAAGAGACAUACUGCCAACGAUCGCGGCA---------AUUUUUUUGGCGGCGCUUUUGUUGUGCGGUGGGUGGGUGUGGGUUGU ...((((..(-((.((.(((.((((((((.((((....(((((((.((........---------...)).)))))))...)))).))))))))))))).)))))))..... ( -35.40, z-score = -0.66, R) >droYak2.chr2R 10945117 105 - 21139217 ACAUCA-UAGCCCAGCAUCAUCCGCACAAAGAGACAAGCUGCCAACGAUCGCGGCA------AUUUUUUUUUUGGCGGCGCUUUUGUUGUGCGGUGGGUGGGUGUGGGUUGU .....(-(((((((.((((..((((((((.((((...((((((((.((........------......)).))))))))..)))).))))))))......)))))))))))) ( -41.34, z-score = -2.36, R) >droSim1.chr2R 9763367 112 - 19596830 ACAUCACUAGCCCAGCAUCAUCCGCACGAAGAGACAAACUGCCAACGAUCGCGGCAUUUUUUUUUUUUAUUUUGGCGGCGCUUUUGUUGUGCGGUGGGUGGGUGUGGGCUGU .......(((((((.((((((((((..(((((((.(((.((((.........)))).))).))))))).........((((.......)))).)))))).))))))))))). ( -38.20, z-score = -1.33, R) >droAna3.scaffold_13266 17560926 84 + 19884421 ---------GCCCAGCAU----CUCAAAGGAAAAAAAAACAAAAAAAAUAAGAAAA------AUGGCUAGAAUGGCGGCACUUUUGUUCUUCGGUGGGUGGCU--------- ---------(((((.(.(----((....)))..................(((((..------...(((........))).......))))).).)))))....--------- ( -13.60, z-score = 0.93, R) >consensus ACAUCACUAGCCCAGCAUCAUCCGCACAAAGAGACAAACUGCCAACGAUCGCGGCA______AUUUUUAUUUUGGCGGCGCUUUUGUUGUGCGGUGGGUGGGUGUGGGCUGU ...((((..(((((.(.....((((((((.((((....(((((((..........................)))))))...)))).))))))))..).)))))))))..... (-22.29 = -23.89 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:18 2011