| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,020,318 – 11,020,417 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 11,020,318 – 11,020,417 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 64.95 |
| Shannon entropy | 0.66676 |
| G+C content | 0.49908 |
| Mean single sequence MFE | -27.25 |
| Consensus MFE | -13.35 |
| Energy contribution | -14.27 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.53 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 11020318 99 + 21146708 UUUCACUUUAUUAUUUUUCGUUUUUUUUUUUUU--U-GCUGGCUAGCUGGCCAUUUUAUGAGGGCGCGCACCUGCCAACAGCUGCCGCCGCCGCCGCAAAAG------- ..............................(((--(-((.(((.....((((((...)))..((((.(((.(((....))).))))))))))))))))))).------- ( -26.00, z-score = -0.40, R) >droSim1.chr2R 9758644 100 + 19596830 UUUCACUUUAUUAUUUUUCGUUUUUUUUUUUUU--UUGCUGGCUAGCUGGCCAUUUUAUGAGGGCGCGCACCUGCCAACAGCUGCCGCCGCCGCCGCAAAAG------- ...............................((--((((.(((.....((((((...)))..((((.(((.(((....))).))))))))))))))))))).------- ( -26.00, z-score = -0.44, R) >droYak2.chr2R 10940622 99 + 21139217 UUUCACUUUAUUAUUUCU----UCUUUUUUUUU--UUGCUGGCUAACUGGUCAUUUUAUGAGGGCGCGCACCUGCCAACAGCUGCCGCCGCCGCAGCCGCAAAAG---- ..................----.........((--((((.((((...(((((((...)))).((((.(((.(((....))).))))))).))).)))))))))).---- ( -27.20, z-score = -1.35, R) >droEre2.scaffold_4845 7735189 81 - 22589142 UUUCACUUUAUUAUUUCU----UUUUUU-----------------GCUGGCCAUUUUAUGAGGGCGCGCACCUGCCAACAGCUGCCGCCGCCGCCGCAUCAG------- ..................----.....(-----------------((.((((((...)))..((((.(((.(((....))).)))))))...))))))....------- ( -20.40, z-score = -0.54, R) >droAna3.scaffold_13266 17557179 95 - 19884421 CUGCUCCUGACCAGCCUGCAUUUUUGUUUCUUGGAUGGUUGGUUGGUUGGCCAUUUUAUGAGGGCGCGCACCUGCCA-CAGCUGCCGCCAUAAAAG------------- ..(((.(..((((((((.((...........)).).)))))))..)..)))..((((((...((((.(((.(((...-))).))))))))))))).------------- ( -30.20, z-score = -0.13, R) >droMoj3.scaffold_6496 9718398 102 - 26866924 ----CUGUUGCUGUUGCAGCAGCGCCUGCAUUU--UGGGUCGUUCGACAA-CGUUUUAUGAGGGCGCGCACCUGCCAACAGCUGCCAGCAAAAAAAUAAGACAACAGCA ----...((((((..(((((.((((((.(((..--...(((....)))..-......))).))))))((....)).....))))))))))).................. ( -33.72, z-score = -0.31, R) >consensus UUUCACUUUAUUAUUUCUC_UUUUUUUUUUUUU__U_GCUGGCUAGCUGGCCAUUUUAUGAGGGCGCGCACCUGCCAACAGCUGCCGCCGCCGCAGCAAAAG_______ .......................................(((((....))))).........((((.(((.(((....))).))))))).................... (-13.35 = -14.27 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:16 2011