| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,019,020 – 11,019,122 |
| Length | 102 |
| Max. P | 0.780387 |
| Location | 11,019,020 – 11,019,122 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 90.15 |
| Shannon entropy | 0.17969 |
| G+C content | 0.39507 |
| Mean single sequence MFE | -18.78 |
| Consensus MFE | -17.92 |
| Energy contribution | -17.95 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11019020 102 + 21146708 ----AACCAAAAUAAAAAA----A--UAAGAAGAAACUCAGAAAAUGAUGGUGGCGAAGAGGAAGAGCACGACAGACGGCGACGAUGUCUGCUUGAAGGUUGUUGUGAAAUU ----...............----.--...........(((.....)))(.(..((((.......(((((.((((..((....)).))))))))).....))))..).).... ( -18.80, z-score = -1.08, R) >droSim1.chr2R_random 2367152 104 + 2996586 ---GAACCAAAAUAAAAAA----AA-UAAGAAGAAACUCUGAAAAUGAUGGUGGCGAAGAGGAAGAGCACGACAGACGGCGACGAUGUCUGCUUGAAGGUUGUUGUGAAAUU ---.((((...........----..-..........((((.................))))...(((((.((((..((....)).)))))))))...))))........... ( -20.33, z-score = -1.70, R) >droSec1.super_1 8513420 105 + 14215200 ---GAACCAAAAUAAAAAA----AAAUAAGAAGAAACUCAGAAAAUGAUGGUGGCGAAGAGGAAGAGCACGACAGACGGCGACGAUGUCUGCUUGAAGGUUGUUGUGAAAUU ---.((((...........----.........(..((.((........))))..).........(((((.((((..((....)).)))))))))...))))........... ( -19.10, z-score = -1.39, R) >droYak2.chr2R 10939268 112 + 21139217 ACCGAACCAAAAUAAAAAAUAAAAACUAAGAAGAAACUCUGAAAAUGAUGGUGGCGAAGAGGAAGAGCACGACAGACGGCGACGAUGUCUGCUUGAAGGUUGUUGUGAAAUU ....((((............................((((.................))))...(((((.((((..((....)).)))))))))...))))........... ( -20.33, z-score = -1.01, R) >droEre2.scaffold_4845 7733899 112 - 22589142 ACCAAACCAAAAUAAAAAAUAAAAAAUCAGAAGAAACUCAGAAAAUGAUGGUGGCGAAGAGGAAGAGCACGACAGACGGCGACGAUGUCUGCUUGAAGGUUGUUGUGAAAUU .....((((.................((....))...(((.....)))))))(((((.......(((((.((((..((....)).))))))))).....)))))........ ( -19.20, z-score = -0.47, R) >droAna3.scaffold_13266 17555956 100 - 19884421 ---AAAAAAAAAUAAAAAC-------UGAGAAAAAAAAC--GAAAUGAUGGUGAAGAAGAGGAAGAGCACGACAGACGGCGACGAUGUCUGCUUGAAGGUUGUUGUGAAAUU ---........((((.(((-------(..........((--.(.....).))............(((((.((((..((....)).)))))))))...)))).))))...... ( -14.90, z-score = -1.31, R) >consensus ___GAACCAAAAUAAAAAA____AA_UAAGAAGAAACUCAGAAAAUGAUGGUGGCGAAGAGGAAGAGCACGACAGACGGCGACGAUGUCUGCUUGAAGGUUGUUGUGAAAUU ................................................(.(..((((.......(((((.((((..((....)).))))))))).....))))..).).... (-17.92 = -17.95 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:15 2011