| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,991,513 – 10,991,608 |
| Length | 95 |
| Max. P | 0.874111 |
| Location | 10,991,513 – 10,991,608 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 72.50 |
| Shannon entropy | 0.47404 |
| G+C content | 0.36005 |
| Mean single sequence MFE | -19.63 |
| Consensus MFE | -11.18 |
| Energy contribution | -11.28 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.874111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10991513 95 + 21146708 AAGCGUUGGCAUUCCAUAAGCGGAUUU-CAUUUGUUUUUCCAGCUUA------GCUAGCGAAUUUCUCAUUCGUUAU-UAAUUUGAUGCUUCUCCCCCAUUUU-------------- ((((((..(.......((((((((...-..........))).)))))------..((((((((.....)))))))).-....)..))))))............-------------- ( -20.12, z-score = -2.27, R) >droSim1.chr2R 9738097 104 + 19596830 AAGCGUUGGCAUUCCAUAAGCGGAUUU-CAUUUGUUUUUCCAGCUUA------GCUAGCGAAUUUCUCAUUCGUUAU-UAAUUUGAUGCUUUUUCCCCCGUUUUUUAUCCCU----- ((((((..(.......((((((((...-..........))).)))))------..((((((((.....)))))))).-....)..)))))).....................----- ( -20.12, z-score = -2.29, R) >droSec1.super_1 8494320 103 + 14215200 AAGCGUUGGCAUUCCAUAAGCGGAUUU-CAUUUGUUUUUCCAGCUUA------GCUAGCGAAUUUCUCAUUCGUUAU-UAAUUUGAUGCUUUUUCCCCCG-UUUGUAUCCCU----- ((((((..(.......((((((((...-..........))).)))))------..((((((((.....)))))))).-....)..)))))).........-...........----- ( -20.12, z-score = -1.83, R) >droYak2.chr2R 10919676 107 + 21139217 AAGCGUUGGAAUUCCAUAAGCGGAUUU-CAUUUGUUUUUCCAGCUUA------GCUAGCGAAUUUCUCAUUUGUUAU-UAAUUUGAUGCUUUUGGAUAU--UUUGUAUCCCUCUUUU ((((((..((......((((((((...-..........))).)))))------..((((((((.....)))))))).-...))..))))))..((((((--...))))))....... ( -23.82, z-score = -2.17, R) >droEre2.scaffold_4845 7714422 108 - 22589142 AAGCAUUGGAAUUCCAUAAGCGGAUUG-CAUUUGUUUUUCCAGUUUUUCCGUUGCAAGCGAAUUUCUCAUUCGUUAU-UAAUUUGAUGCUUUUGCAAAU--UUUGUAUCCCU----- ((((((..((........((((((..(-(.............))...))))))...(((((((.....)))))))..-...))..)))))).((((...--..)))).....----- ( -21.52, z-score = -1.16, R) >dp4.chr3 8868914 96 + 19779522 AUACAAUGAAAUGCCAUAAGCGGAUUUUCAUUUGUUUUUCCAGCUUA------GUCAACAGUUUUUCCACUCGGUACAUAUUCUUCUGUACUUUGGAAACAU--------------- ...........((...((((((((....(....)....))).)))))------..))......((((((...((((((........)))))).))))))...--------------- ( -17.70, z-score = -1.52, R) >droPer1.super_4 2754068 96 + 7162766 AUACAAUGAAAUGCCAUAAGCGGAUUUUCAUUUGUUUUUCCAGCUUA------GCCAACAGUUUUUCCACUCGGUCCAUAUUCUUCUGUACUUUGGAAACAU--------------- .((((..((((((...((((((((....(....)....))).)))))------(((...(((......))).))).))).)))...))))...((....)).--------------- ( -14.00, z-score = -0.01, R) >consensus AAGCGUUGGAAUUCCAUAAGCGGAUUU_CAUUUGUUUUUCCAGCUUA______GCUAGCGAAUUUCUCAUUCGUUAU_UAAUUUGAUGCUUUUUCCAAA__UUU_UAUCCCU_____ .(((((((........((((((((..............))).))))).........(((((((.....)))))))........)))))))........................... (-11.18 = -11.28 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:13 2011