| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,967,225 – 10,967,322 |
| Length | 97 |
| Max. P | 0.697137 |
| Location | 10,967,225 – 10,967,322 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 71.46 |
| Shannon entropy | 0.51435 |
| G+C content | 0.45942 |
| Mean single sequence MFE | -25.21 |
| Consensus MFE | -16.40 |
| Energy contribution | -16.02 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10967225 97 + 21146708 AAAAGCAUUUCGUACUCAACGCUUCGGUUAAAUGUUGCAUGCAAAUGUGAUGGUUUGAUCCGGAGAUACGGGGUAACAUGGAUAAAGGUUCGCAGGA----------------- ....((......(((((....((((((((((((((..(((....)))..)).)))))).)))))).....)))))....((((....))))))....----------------- ( -25.20, z-score = -1.22, R) >droSim1.chr2R 9719476 97 + 19596830 AAAAGCUUUUCGUACUCAACGCUUCGGUUAAAUGUUGCAUGCAAAUGUGAUGGUUUGAUCCGGGGAUACGGGGUAACAUGGAUAAAGGUUCGCAGGA----------------- ....((......(((((....((((((((((((((..(((....)))..)).)))))).)))))).....)))))....((((....))))))....----------------- ( -23.90, z-score = -0.66, R) >droSec1.super_1 8476989 97 + 14215200 AAAAGCUUUUCGUACUCAACGCUUCGGUUAAAUGUUGCAUGCAAAUGUGAUGGUUUGAUCCGGGGAUACGGGGUAACAUGGAUAAAGGUUCGCAGGA----------------- ....((......(((((....((((((((((((((..(((....)))..)).)))))).)))))).....)))))....((((....))))))....----------------- ( -23.90, z-score = -0.66, R) >droYak2.chr2R 10901678 97 + 21139217 AAAAGCUUU-CGUACUCAACGCUUCGGUUAAAUGUUGCAUGCAAAUGUGAUGGUUUGAUCCGGGGAUGCGGAGUUGCAGGGAUACAGGGAUCCCGGGA---------------- ......(..-(((((((..((((((((((((((((..(((....)))..)).)))))).)))))).))..))).))).(((((......))))))..)---------------- ( -30.80, z-score = -1.33, R) >droEre2.scaffold_4845 7695955 114 - 22589142 AAAAGCUUUUCGUGCUCAACGCUUCGGUUAAAUGUUGCAUGCAAAUGUGAUGGUUUGAUCCGGGGAUACGGGGUUACGGGGUUACAGGGAUACAGGGAUACAGGAGUCCCAGGA .......(..(((((((....((((((((((((((..(((....)))..)).)))))).)))))).....))).))))..).....(((((.(..(....)..).))))).... ( -33.60, z-score = -1.14, R) >droAna3.scaffold_13266 17518109 86 - 19884421 AAAAUCAUUUCGUAUUCAACGCUUUGGUUAAAUGUUGCAUGCAAAUGUGACGAUUUGAUCCUGGGAAUCCAUGGGAUACCGCUAAC---------------------------- ...........((((((........((((((((((..(((....)))..)).)))))))).(((....)))..)))))).......---------------------------- ( -19.10, z-score = -0.68, R) >dp4.chr3 8853547 78 + 19779522 ACAGCUCUUUGGCAUUCAACGGUUCGGUUAAAUGUUGCAUGCAAAUGUGAUGGUUUGAUCCGAUGGGGCGAGGCAGCA------------------------------------ ...((((((((.(...((.(((.((((.....(((..(((....)))..)))..)))).))).)).).))))).))).------------------------------------ ( -22.60, z-score = -0.53, R) >droPer1.super_4 2738665 78 + 7162766 ACAGCUCUUUGGCAUUCAACGGUUCGGUUAAAUGUUGCAUGCAAAUGUGAUGGUUUGAUCCGAUGGGGCGAGGCAGCA------------------------------------ ...((((((((.(...((.(((.((((.....(((..(((....)))..)))..)))).))).)).).))))).))).------------------------------------ ( -22.60, z-score = -0.53, R) >consensus AAAAGCUUUUCGUACUCAACGCUUCGGUUAAAUGUUGCAUGCAAAUGUGAUGGUUUGAUCCGGGGAUACGGGGUAACAUGGAUAAAGG____CAGG__________________ ...........((.(((....((((((((((((((..(((....)))..)).)))))).))))))....)))...))..................................... (-16.40 = -16.02 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:09 2011