| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,946,413 – 10,946,508 |
| Length | 95 |
| Max. P | 0.500000 |
| Location | 10,946,413 – 10,946,508 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 64.50 |
| Shannon entropy | 0.76274 |
| G+C content | 0.48754 |
| Mean single sequence MFE | -17.90 |
| Consensus MFE | -8.75 |
| Energy contribution | -8.29 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.19 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 10946413 95 + 21146708 -CUUGCCCCAACUAUCCCAUCG--UAAGUGCAUAAACGUGUCGGUGUAUUACGAGUUCAUUUGCUUC---GCACUUU---GCCGGCCUAGGGUGCUCAUUCACG -...(((((..........(((--(((.(((((..(....)..)))))))))))........(((..---((.....---)).)))...))).))......... ( -19.90, z-score = 0.41, R) >droSim1.chr2R 9698774 94 + 19596830 -UUUACCCCAACUAUCCCAUCC--UAAGUGCAUAAACGUGUCGGUGUAUUACGAGUUCAUUUGCUCC---GCACUU----GCCGGCCUAGGGUCCUCAUUCACG -.................((((--((.((......))(.(((((((......((((......)))).---.....)----)))))))))))))........... ( -18.00, z-score = -0.20, R) >droSec1.super_1 8456218 94 + 14215200 -UUUGCCCCAACUAUCCCAUCC--UAAGUGCAUAAACGUGUCGGUGCAUUACGAGUUCAUUUGCUCC---GCACUU----GCCGGCCUAGGGUCCUCAUUCACG -.................((((--((.(.((......(((.(((.(((.............))).))---))))..----....)))))))))........... ( -18.82, z-score = 0.07, R) >droYak2.chr2R 10880001 94 + 21139217 -UUUGCCCCAACUAUCCCAUCC--UAAGUGCAUAAACGUGUCGGUGUAUUACGAGUUCAUUUGCUCC---GCACUU----GCCGGCCUAGGGUCCUCAUUCUCG -.................((((--((.((......))(.(((((((......((((......)))).---.....)----)))))))))))))........... ( -18.00, z-score = 0.02, R) >droEre2.scaffold_4845 7675816 94 - 22589142 -UUUGCCCACACUAUCCCAUCC--UAAGUGCAUAAACGUGUCGGUGUAUUACGAGUUCAUUUGCUCC---GCACUU----GCCGGCCUAGGGACCUCAUUCCGG -.............((((....--...((......))(.(((((((......((((......)))).---.....)----)))))))..))))........... ( -19.30, z-score = 0.55, R) >droAna3.scaffold_13266 17496436 79 - 19884421 ---GAAGCCCCUCCGGCCCUCU--UAAGUGCAUAAACGUGUCGGUGGAUUACGAGUUCAUUUGCUCC---GCACUUU---GCCGGCCUAG-------------- ---...........((((....--.((((((......(((((....)).)))((((......)))).---)))))).---...))))...-------------- ( -21.40, z-score = -0.77, R) >dp4.chr3 8833790 86 + 19779522 ---------------CGUGCCUCUUAAGUGCUUAAACGUGUCAGUGUAUUACGGGUUCAUUUGCUCC---GCACUCGCAGGCCUUUUCCACAUCUCUAUCUGUG ---------------.(.((((....(((((.....((((.........))))((..(....)..))---)))))...))))).....((((........)))) ( -16.80, z-score = -0.41, R) >droPer1.super_4 2718881 86 + 7162766 ---------------CGUGCCUCUUAAGUGCUUAAACGUGUCAGUGUAUUACGGGUUCAUUUGCUCC---GCACUCGCAGGCCUAUUCCACAUCUCUAUCUGUG ---------------.(.((((....(((((.....((((.........))))((..(....)..))---)))))...))))).....((((........)))) ( -16.80, z-score = -0.28, R) >droWil1.scaffold_180699 2363754 94 + 2593675 -UUUACCCCCCCUUUACCACCCGCUAAGUGCAUAAACGUGUCACAGUAUUACGAGUUCAUUUACUUCUAGGCACUUC---ACUU-CAACUAGUCCUAGU----- -..........................((((((....))).)))........((((......))))(((((.(((..---....-.....)))))))).----- ( -11.50, z-score = -0.41, R) >droVir3.scaffold_12875 9813187 93 + 20611582 -GCUACUACUAUCAUCUCCUCU-CUAAGUGCAUAAACGUGUCAGUGUAUUACGAGUUCAUUUACUCC---AUACUGGGCAACGAGUCGGAGAACCACC------ -.............(((((.((-(...((......)).((((...((((...((((......)))).---))))..))))..)))..)))))......------ ( -20.00, z-score = -0.79, R) >droGri2.scaffold_15245 3020033 94 + 18325388 UGCUAAUACUAUCCUCUGCUUU-CUAAGUGCAUAUAUGUGUUAGUGUAUUACGAGUUCAUUUACUCU---AUACUCGGCAUUGAGACGACCAUUCUCC------ .((((((((.......(((...-......))).....))))))))((((...((((......)))).---))))........((((.......)))).------ ( -16.40, z-score = -0.33, R) >consensus _UUUACCCCAACUAUCCCAUCC__UAAGUGCAUAAACGUGUCGGUGUAUUACGAGUUCAUUUGCUCC___GCACUU____GCCGGCCUAGGGUCCUCAUUC__G ..........................(((((......(((.........)))((((......))))....)))))............................. ( -8.75 = -8.29 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:04 2011