| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,942,419 – 10,942,520 |
| Length | 101 |
| Max. P | 0.655010 |
| Location | 10,942,419 – 10,942,520 |
|---|---|
| Length | 101 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 73.54 |
| Shannon entropy | 0.52284 |
| G+C content | 0.46072 |
| Mean single sequence MFE | -32.42 |
| Consensus MFE | -10.37 |
| Energy contribution | -10.46 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10942419 101 - 21146708 AAGCAGAGUUGCUUCGCUUCAGUGAAUUUUAUUAAUGAACUGUGGCC-------AACUGUGGCUCUGGAAAGUAACUCGAGAGCCA----UGGGGCUAUGGUUCAAACAUUG-- .(((......)))((((....))))..........((((((((((((-------..((((((((((.((.......)).)))))))----))))))))))))))).......-- ( -39.70, z-score = -4.51, R) >droPer1.super_4 2716399 114 - 7162766 AAGCAAAGCUGCUUCGCUUCAGUGAAUUUUAUUAAUGAACUGUGGCCAACUGGGAACUGGGGCUGUGGCAAGUAACUCGAGAGCCGGGGCUGGUGCUGGGUCUCGCGUUUUGUC ..((((((((((((.(((.((((..(((.....)))..)))).((((....(....)...))))..))))))))...(((((.((((.(....).)))).))))).))))))). ( -36.90, z-score = -0.42, R) >dp4.chr3 8831332 114 - 19779522 AAGCAAAGCUGCUUCGCUUCAGUGAAUUUUAUUAAUGAACUGUGGCCAACUGGGAACUGGGGCUGUGGCAAGUAACUCGAGAGCCGGGGCUGGUGCUGGGGCUCGCGUUUUGUC ..((((((((((((.(((.((((..(((.....)))..)))).((((....(....)...))))..))))))))....(.(((((..(((....)))..))))).)))))))). ( -36.50, z-score = 0.00, R) >droAna3.scaffold_13266 17493894 92 + 19884421 AAGCAAAGUUGCUUCGCUUCAGUGAAUUUUAUUAAUGAACUGUGGC--------CAA-CUGCGGCUGGAAAGUAACUCGAGAGC-----CAUGGGUUCAGGUAUUG-------- ..((..(((((((((....((((..(((.....)))..)))).(((--------(..-....)))).).))))))))...((((-----(...)))))..))....-------- ( -21.30, z-score = 0.44, R) >droEre2.scaffold_4845 7671551 101 + 22589142 AAGCAGAGUUGCUUCGCUUCAGUGAAUUUUAUUAAUGAACUGUGGCC-------AACUGUGGCUCUGGAAAGUAACUCGAGAGCCA----UGGGGCUAUGGUUCAAGCAUUG-- ..((........(((((....))))).........((((((((((((-------..((((((((((.((.......)).)))))))----))))))))))))))).))....-- ( -41.10, z-score = -4.49, R) >droYak2.chr2R 10875284 101 - 21139217 AAGCAGAGUUGCUUCGCUUCAGUGAAUUUUAUUAAUGAACUGUGGCC-------AACUGUGGCUCUGGCAAGUAACUCGAGAGCCA----UGGGGCUAUGGUUCAAACAUUG-- .(((......)))((((....))))..........((((((((((((-------..((((((((((.(.........).)))))))----))))))))))))))).......-- ( -36.80, z-score = -3.20, R) >droSec1.super_1 8452067 101 - 14215200 AAGCAGAGUUGCUUCGCUUCAGUGAAUUUUAUUAAUGAACUGUGGCC-------AACUGUGGCUCUGGAAAGUAACUCGAGAGCCA----UGGGGCUAUGGUUCAAACAUUG-- .(((......)))((((....))))..........((((((((((((-------..((((((((((.((.......)).)))))))----))))))))))))))).......-- ( -39.70, z-score = -4.51, R) >droSim1.chr2R 9695088 101 - 19596830 AAGCAGAGUUGCUUCGCUUCAGUGAAUUUUAUUAAUGAACUGUGGCC-------AACUGUGGCUCUGGAAAGUAACUCGAGAGCCA----UGGGGCUAUGGUUCAAACAUUG-- .(((......)))((((....))))..........((((((((((((-------..((((((((((.((.......)).)))))))----))))))))))))))).......-- ( -39.70, z-score = -4.51, R) >droVir3.scaffold_12875 9810457 76 - 20611582 AAGCAAAGCUGCUUCGCUUCAGUGAAUUUUAUUAAUGAACUGUGGC--------GAACGC------GGUGAGUAACUCGAG---------CAACGUUUG--------------- ..((...(((((((((((.((((..(((.....)))..)))).)))--------))).))------)))(((...)))..)---------)........--------------- ( -24.30, z-score = -2.02, R) >droMoj3.scaffold_6496 9626915 76 + 26866924 AAGCAAAGUUGCUUCGCUUCAGUGAAUUUUAUUAAUGAACUGUGGC--------GAACGC------CGGGAGUAACUCGAG---------CUUCGUUUG--------------- ((((.(((((((((((((.((((..(((.....)))..)))).)))--------))).))------((((.....))))))---------))).)))).--------------- ( -23.60, z-score = -2.01, R) >droWil1.scaffold_180699 2359689 86 - 2593675 AAGCAAAGUUGCCUCGCUUCAGUGAAUUUUAUUAAUGAACUGUGGC--------CAAGAUGUGG--GGAAGGUAACUCGAG----------UAUGUUCAGGUUUUG-------- ((((..((((((((((((.((((..(((.....)))..)))).)))--------((.....)).--.).)))))))).(((----------....)))..))))..-------- ( -17.00, z-score = 0.58, R) >consensus AAGCAAAGUUGCUUCGCUUCAGUGAAUUUUAUUAAUGAACUGUGGCC_______AACUGUGGCUCUGGAAAGUAACUCGAGAGCCA____UGGGGCUAUGGUUCAA_CAUUG__ (((((....))))).(((.((((..(((.....)))..)))).))).................................................................... (-10.37 = -10.46 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:01 2011