| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,940,751 – 10,940,846 |
| Length | 95 |
| Max. P | 0.991718 |
| Location | 10,940,751 – 10,940,846 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 71.52 |
| Shannon entropy | 0.49939 |
| G+C content | 0.39527 |
| Mean single sequence MFE | -26.82 |
| Consensus MFE | -13.97 |
| Energy contribution | -14.03 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.49 |
| SVM RNA-class probability | 0.991718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10940751 95 + 21146708 -----ACAUUUCACACAGAGAAACGCUUCAUUGGCGGCUCAAGAUACGGAUUGAAUAUUCUGAAAUGAAUUAAGAAGCAGUUAUUAGUGCGGCCUGUGUG------------ -----......(((((((.((..((((.....))))..))..(.(((.(((((....((((...........)))).)))))....))))...)))))))------------ ( -22.90, z-score = -0.97, R) >droEre2.scaffold_4845 7669942 94 - 22589142 -----ACAUUUCACACAGGGAAACGCUUCAUUGGCGGCUCAAGAUACAGAUGGAAUAUUCUGAAAUACAUUAAU-AGCCGUUAUUAGUGAGGCCUGUGUG------------ -----......((((((((....)(((((((((((((((.......((((........))))............-))))))...))))))))))))))))------------ ( -31.31, z-score = -4.13, R) >droYak2.chr2R 10873630 95 + 21139217 -----ACAUUUCGCACAGGGAAACGCUUCAUUGACGGCUCAAGAUACAGAUGGAAUAUUCUGAAAAUAAUUCAUUAGCAGUUAUUAGUGAGGCCUGUGUG------------ -----......((((((((....)((((((((((..((((......((((........))))....(((....)))).)))..)))))))))))))))))------------ ( -29.00, z-score = -3.40, R) >droSec1.super_1 8450408 95 + 14215200 -----ACAUUUCACACAGAGAAACGCUUCAUUGGCGGCUCAAGAUACGGAUUGAAUAUGCUGAAGUGAAUUAACAAGCAGUUAUUAGUGCGGCCUGUGUG------------ -----......(((((((.((..((((.....))))..))......((.(((((...((((...((......)).))))....))))).))..)))))))------------ ( -27.10, z-score = -1.81, R) >droSim1.chr2R 9693414 95 + 19596830 -----ACAUUUCACACAGAGAAACGCUUCAUUGGCGGCUCAAGAUACGGAUUGAAUAUUCCGAAAUGAAUUAACAAGCAGUUAUUAGUGCGGCCUGUGUG------------ -----......(((((((.((..((((.....))))..))......((((........))))..............(((.(....).)))...)))))))------------ ( -24.90, z-score = -1.80, R) >droGri2.scaffold_15245 3015935 109 + 18325388 AACUGAGUAGUUAAACUAAGUAUUAUUU-GUUUGCGGAUCAAUUCGCAAAUAAAGUA-GUUGGACUAUAUUAUUGAAUGAUUAA-GGUGCAAUUCCCAUAAGUAAUUGUUUG ......((((((.(((((.......(((-(((((((((....)))))))))))).))-))).))))))......(((..((((.-.(((.......)))...))))..))). ( -25.70, z-score = -2.81, R) >consensus _____ACAUUUCACACAGAGAAACGCUUCAUUGGCGGCUCAAGAUACAGAUUGAAUAUUCUGAAAUGAAUUAAUAAGCAGUUAUUAGUGCGGCCUGUGUG____________ ...........(((((((.((..((((.....))))..))......((((........))))...............................)))))))............ (-13.97 = -14.03 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:00 2011