| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,923,458 – 10,923,516 |
| Length | 58 |
| Max. P | 0.909713 |
| Location | 10,923,458 – 10,923,516 |
|---|---|
| Length | 58 |
| Sequences | 7 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 68.28 |
| Shannon entropy | 0.61923 |
| G+C content | 0.49093 |
| Mean single sequence MFE | -14.43 |
| Consensus MFE | -7.88 |
| Energy contribution | -8.03 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.70 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909713 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10923458 58 - 21146708 -ACUGCGGCCAUUACGUGGCAGAUGGUCGUAGCUGUACAGAGAGGAAAAGAAGACGUCG--- -.(((((((((((........)))))))))))...........................--- ( -15.60, z-score = -0.90, R) >anoGam1.chr3L 7918261 62 - 41284009 GAAAGAGACAAUCACAGUACAGUUACAAUUAUCUGGCCGGGAUUAGAAAGAUAAGGAUGUCG ......((((.((...(((....)))..((((((..(........)..)))))))).)))). ( -9.80, z-score = -0.90, R) >droSim1.chr2R 9676543 58 - 19596830 -ACUGCGGCCAUUACGUGGCAGAUGGUCGUAGCUGUACAGAGAGGAAAAGAAGACGUAG--- -.(((((((((((........)))))))))))...........................--- ( -15.60, z-score = -1.45, R) >droSec1.super_1 8433323 58 - 14215200 -ACUGCGGCCAUUACGUGGCAGAUGGUCGUAGCUGUACAGAGAGGAAAAGAAGACGUAG--- -.(((((((((((........)))))))))))...........................--- ( -15.60, z-score = -1.45, R) >droYak2.chr2R 10851342 58 - 21139217 -ACUGCGGCCAUUACGUGGCAGAUGGUGGUAGCUGUGCAGAGAGAAAAAUACAUUGUAG--- -.((((.(((((...)))))..(((((....)))))))))...................--- ( -13.50, z-score = -0.26, R) >droEre2.scaffold_4845 7653037 58 + 22589142 -ACUGCGGCCAUUACGUGGCAGAUGGUGGUGGCUGUACAGAGAGCAAAAUACAUUGCAC--- -..((((((((((((..........))))))))))))......((((......))))..--- ( -19.30, z-score = -1.84, R) >droAna3.scaffold_13266 17474863 56 + 19884421 -ACGGUGGCCAUUCCAUGACAAUUGGUGGCAACUGCAGAGAAAGAAAUGGGAAAUAC----- -.((((.((((..(((.......))))))).))))......................----- ( -11.60, z-score = -0.72, R) >consensus _ACUGCGGCCAUUACGUGGCAGAUGGUCGUAGCUGUACAGAGAGAAAAAGAAAACGUAG___ ..((((.((((((........)))))).)))).............................. ( -7.88 = -8.03 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:57 2011