| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,916,496 – 10,916,594 |
| Length | 98 |
| Max. P | 0.575406 |
| Location | 10,916,496 – 10,916,594 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.71 |
| Shannon entropy | 0.44586 |
| G+C content | 0.40310 |
| Mean single sequence MFE | -24.36 |
| Consensus MFE | -13.27 |
| Energy contribution | -12.01 |
| Covariance contribution | -1.26 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575406 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10916496 98 - 21146708 -CGACCGUGU----GCUCACCCAUUUGUUUUUAUAAAACUUAAUGGUCGGCUGAUUGCCGGGCAAAAUGUCGACAUUAUCCAUAUAUCUCUGUACAAAUAUGC------ -((((....(----((((..(((((.((((.....))))..)))))..(((.....))))))))....))))........(((((............))))).------ ( -22.90, z-score = -1.49, R) >droSim1.chr2R 9669590 98 - 19596830 -CGACCGUGU----GCUCACCCAUUUGUUUUUAUAAAACUUAAUGGUCGGCUGAUUGCCGGGCAAAAUGUCGGCAUUAUCCAUAUAUCUGUGUACAAAUAUGC------ -((((....(----((((..(((((.((((.....))))..)))))..(((.....))))))))....))))((((....((((....)))).......))))------ ( -24.70, z-score = -1.11, R) >droSec1.super_1 8421592 98 - 14215200 -CGACCGUGU----GCUCACCCAUUUGUUUUUAUAAAACUUAAUGGUCGGCUGAUUGCCGGGCAAAAUGUCGGCAUUAUCCAUAUAUCUGUGUACAAAUAUGC------ -((((....(----((((..(((((.((((.....))))..)))))..(((.....))))))))....))))((((....((((....)))).......))))------ ( -24.70, z-score = -1.11, R) >droYak2.chr2R 10844242 98 - 21139217 -CGACCGUGU----GCUCACCCAUUUGUUUUUAUAAAACUUAAUGGUCCGCUGAUUGCCGGGCAAAAUGUCGGCAUUAUCCAUACAACUUUGUACAAAUAUGC------ -((((....(----((((..(((((.((((.....))))..)))))...((.....)).)))))....))))((((......((((....)))).....))))------ ( -21.90, z-score = -0.76, R) >droEre2.scaffold_4845 7646101 98 + 22589142 -CGACCGUGU----GCUCACCCAUUUGUUUUUAUAAAACUUAAUGGUCGGCUGAUUGCCGGGCAAAAUGUCGGCGUUAUCCACACAUCUGUGUACAAAUAUGC------ -((((....(----((((..(((((.((((.....))))..)))))..(((.....))))))))....))))((((.....((((....))))......))))------ ( -28.10, z-score = -1.77, R) >droPer1.super_4 2691215 98 - 7162766 -------UGU----GUUCGCCCAUUUGUUUUUAUAAAACUUAAUGGCCGACUGAUUGCCGGCCACAAUGUUGGCAGUACCUAUACAUAUAUGCAUGCAUAUGUAUAGAU -------...----..(((.(((((.((((.....))))..))))).)))...(((((((((......)))))))))..((((((((((........)))))))))).. ( -29.60, z-score = -2.61, R) >dp4.chr3 8807231 98 - 19779522 -------UGU----GUUCGCCCAUUUGUUUUUAUAAAACUUAAUGGCCGACUGAUUGCCGGCCACAAUGUUGGCAGUACCUAUACAUAUAUGCAUGCAUAUGUAUAGAU -------...----..(((.(((((.((((.....))))..))))).)))...(((((((((......)))))))))..((((((((((........)))))))))).. ( -29.60, z-score = -2.61, R) >droVir3.scaffold_12875 9781659 89 - 20611582 UCAGCUUUAUAGAAGCCAGCUCGUUUGUUUUUAAAAAGUUUAAUGGCCGUCUGAUUGCAGACCAAAAUGUUCGUAUUACCUAUUUAUAU-------------------- ..((((((.(((((((.((....)).))))))).))))))........(((((....)))))...........................-------------------- ( -13.40, z-score = -0.12, R) >consensus _CGACCGUGU____GCUCACCCAUUUGUUUUUAUAAAACUUAAUGGUCGGCUGAUUGCCGGGCAAAAUGUCGGCAUUAUCCAUACAUCUGUGUACAAAUAUGC______ ..............(((.((.((((.((((.....))))..)))))).)))....((((((........)))))).................................. (-13.27 = -12.01 + -1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:56 2011