| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,893,147 – 10,893,240 |
| Length | 93 |
| Max. P | 0.521812 |
| Location | 10,893,147 – 10,893,240 |
|---|---|
| Length | 93 |
| Sequences | 10 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.13 |
| Shannon entropy | 0.44737 |
| G+C content | 0.46143 |
| Mean single sequence MFE | -25.63 |
| Consensus MFE | -18.26 |
| Energy contribution | -18.41 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.19 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.521812 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10893147 93 + 21146708 -----------GGGGGGGGUCAGGCUACAACUGUAGGCAACUAAGGCGCAUAAGCGUCGUCAUCUAAUAAAAAUUUAAAGCCAUUAUUGCAAGUUGCCAGCGUA---------------- -----------((..(..(.....)..)..))((.(((((((..(((((....))))).....................((.......)).))))))).))...---------------- ( -22.90, z-score = -0.34, R) >droSim1.chr2R 9652684 93 + 19596830 -----------GGGGAGGGGCAGGCUACAACUGUAGGCAACUAAGGCGCAUAAGCGUCGUCAUCUAAUAAAAAUUUAAAGCCAUUAUUGCAAGUUGCCAGCGUA---------------- -----------........((((.......)))).(((((((..(((((....))))).....................((.......)).)))))))......---------------- ( -23.40, z-score = -0.26, R) >droYak2.chr2R 10827715 109 + 21139217 -----------GCUGGGAGCCAGGCUACAACUGUAGGCAACUAAGGCGCAUAAGCGUCGUCAUCUAAUAAAAAUUUAAAGCCAUUAUUGCAACUUGCCAGCGUCCUCGGGCUGCGCCGCA -----------((.((.((((.((((.......(((....))).(((((....)))))....................))))......((.....))...........)))).).).)). ( -28.90, z-score = 1.22, R) >droSec1.super_1 8406025 93 + 14215200 -----------GGUGUGGGGCAGGCUACAACUGUAGGCAACUAAGGCGCAUAAGCGUCGUCAUCUAAUAAAAAUUUAAAGACAUUAUUGCAAGUUGCCAGCGUA---------------- -----------(((((((......)))).)))((.(((((((..(((((....)))))(((....(((....)))....))).........))))))).))...---------------- ( -25.90, z-score = -1.41, R) >droAna3.scaffold_13266 17452031 100 - 19884421 --------------GUAGAG-GAACAGCAACUGUAGGCAACUAAGGCGCAUAAGCGUCGUCAUCUAAUAAAAAUUUAAAGCCAUUAUUGCAAGUUGCCAACGUCCUCGGGCUCCA----- --------------((.(((-((((((...)))).(((((((..(((((....))))).....................((.......)).)))))))....)))))..))....----- ( -29.40, z-score = -2.74, R) >droPer1.super_4 2675864 99 + 7162766 -----------GGUGCGACGCGAGCAACAACUGUAGGCAACUAAGGCGCAUAAGCGUCGUCAUCUAAUAAAAAUUUAAAGCCAUUAUUGCAAGUUGCCAACGUCCUCGAG---------- -----------.(.(.((((...(((.....))).(((((((..(((((....))))).....................((.......)).)))))))..))))).)...---------- ( -24.40, z-score = -0.63, R) >dp4.chr3 8791895 99 + 19779522 -----------GGUGCGACGCGAGCAACAACUGUAGGCAACUAAGGCGCAUAAGCGUCGUCAUCUAAUAAAAAUUUAAAGCCAUUAUUGCAAGUUGCCAACGUCCUCGAG---------- -----------.(.(.((((...(((.....))).(((((((..(((((....))))).....................((.......)).)))))))..))))).)...---------- ( -24.40, z-score = -0.63, R) >droWil1.scaffold_180699 2308605 110 + 2593675 AGUAUGGCAUCGUCCAAGCAGCAGGCAGACUCGAUGGCAACUAAGGCGCAUAAGCGUCGUCAUCUAAUAAAAAUUUAAAGCCAUUAUUGCAAGUUGCCAACGUUCUGGAG---------- .((.(((......))).))......((((..((.((((((((..(((((....))))).....................((.......)).)))))))).)).))))...---------- ( -30.30, z-score = -1.64, R) >droVir3.scaffold_12875 9763015 91 + 20611582 --------AACGUGCCGG-----GGCUGCAUAGAAGGCAACUAAGGCACAUAAGCGUCGUCAUCUAAUAAAAAUUUAAAGCCAUUAUUGCCAGUUGCCCUUAUA---------------- --------...((((...-----.)).))......(((((((..((((.((((((........................))..)))))))))))))))......---------------- ( -18.56, z-score = 0.76, R) >droGri2.scaffold_15245 2970389 91 + 18325388 --------AACGUGCCGG-----GGCAGCAUAGAAGGCAACUAAGGCGCAUAAGCGUCGUCAUCUAAUAAAAAUUUAAAGCCAUUACUGCCAGUUGCCCCCAUU---------------- --------........((-----((((((.((((((....))..(((((....)))))....)))).............((.......))..))))))))....---------------- ( -28.10, z-score = -2.21, R) >consensus ___________GGGGCGGGGCAAGCUACAACUGUAGGCAACUAAGGCGCAUAAGCGUCGUCAUCUAAUAAAAAUUUAAAGCCAUUAUUGCAAGUUGCCAACGUA________________ ................................((.(((((((..(((((....))))).....................((.......)).))))))).))................... (-18.26 = -18.41 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:56 2011