| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,856,726 – 10,856,821 |
| Length | 95 |
| Max. P | 0.765062 |
| Location | 10,856,726 – 10,856,821 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 99.37 |
| Shannon entropy | 0.01022 |
| G+C content | 0.41684 |
| Mean single sequence MFE | -23.78 |
| Consensus MFE | -23.06 |
| Energy contribution | -22.82 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.765062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10856726 95 - 21146708 AGUUGCGGUUUUGAAGUUGGCAGCAAAAACGCUGAGCAACUAAAAAUAAUUAUGGUUACACCAGAGCUCUCAACACAUUGAGGCGCACAGAUACA .((.((.(((((..(((((.((((......))))..))))).))))).....(((.....)))..((.(((((....)))))))))))....... ( -24.30, z-score = -1.41, R) >droSim1.chr2R 9617118 95 - 19596830 AGUUGCGGUUUUGAAGUUGGCAGCAAAAACGCUGAGCAACUAAAAAUAAUUAUGGUUACACCAGAGCUCUCAACACAUUGAGGCGCACAGAUACA .((.((.(((((..(((((.((((......))))..))))).))))).....(((.....)))..((.(((((....)))))))))))....... ( -24.30, z-score = -1.41, R) >droSec1.super_1 8369331 95 - 14215200 AGUUGCGGUUUUGAAGUUGGCAGCAAAAACGCUGAGCAACUAAAAAUAAUUAUGGUUACACCAGAGCUCUCAACACAUUGAGGCGCACAGAUACA .((.((.(((((..(((((.((((......))))..))))).))))).....(((.....)))..((.(((((....)))))))))))....... ( -24.30, z-score = -1.41, R) >droYak2.chr2R 10786964 95 - 21139217 AGUUGCGGUUUUGAAGUUGGCAGCAAAAACGCUGAGCAACUAAAAAUAAUUAUGGUUACACCAGAGCUCUCAACACAUUGAGGCACACAGAUACA .((((((((((((.(((((.((((......))))..)))))...........((....)).)))))))(((((....)))))))).))....... ( -23.00, z-score = -1.42, R) >droEre2.scaffold_4845 7592208 95 + 22589142 AGUUGCGGUUUUGAAGUUGGCAGCAAAAACGCUGAGCAACUAAAAAUAAUUAUGGUUACACCAGAGCUCUCAACACAUUGAGGCACACAGAUACA .((((((((((((.(((((.((((......))))..)))))...........((....)).)))))))(((((....)))))))).))....... ( -23.00, z-score = -1.42, R) >consensus AGUUGCGGUUUUGAAGUUGGCAGCAAAAACGCUGAGCAACUAAAAAUAAUUAUGGUUACACCAGAGCUCUCAACACAUUGAGGCGCACAGAUACA .((((((((((((.(((((.((((......))))..)))))...........((....)).)))))))(((((....)))))))).))....... (-23.06 = -22.82 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:49 2011