Locus 4154

Sequence ID dm3.chr2R
Location 10,855,401 – 10,855,453
Length 52
Max. P 0.521947
window5697

overview

Window 7

Location 10,855,401 – 10,855,453
Length 52
Sequences 6
Columns 56
Reading direction forward
Mean pairwise identity 76.92
Shannon entropy 0.43514
G+C content 0.50037
Mean single sequence MFE -15.57
Consensus MFE -9.41
Energy contribution -8.58
Covariance contribution -0.83
Combinations/Pair 1.57
Mean z-score -1.22
Structure conservation index 0.60
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.06
SVM RNA-class probability 0.521947
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr2R 10855401 52 + 21146708
UUGGUUGUUGUCGCUCCACGUUUAUUGUGGCUGUUGC--ACAGCGGAAAAAAAC--
((.(((((.((.((.(((((.....)))))..)).))--))))).)).......-- ( -14.60, z-score =  -1.33, R)
>droSim1.chr2R 9615776 53 + 19596830
UUGGUUGUUGUCGCUCCACGUUUCUUGUGGCUGUUGC--ACAGCGGAAAAAAAGC-
((.(((((.((.((.(((((.....)))))..)).))--))))).))........- ( -14.60, z-score =  -0.83, R)
>droSec1.super_1 8367973 53 + 14215200
UUGGUUGUUGUCGCUCCACGUUUCUUGUGGCUGUUGC--ACAGCGGAAAAAAAAC-
((.(((((.((.((.(((((.....)))))..)).))--))))).))........- ( -14.60, z-score =  -1.21, R)
>droYak2.chr2R 10785587 51 + 21139217
UUGGUUGUUGUCGCUCCGCGUUUAUUGUGGCUGCUGC--ACAGCGGAAAAGCC---
((.(((((.((.((.(((((.....)))))..)).))--))))).))......--- ( -15.70, z-score =  -0.59, R)
>droEre2.scaffold_4845 7590856 51 - 22589142
UUGGUUGUUGUCGCUCCACGUUACUUGUGGCUGCUGC--ACAGCGGAAAAACC---
((.(((((.((.((.(((((.....)))))..)).))--))))).))......--- ( -16.10, z-score =  -1.31, R)
>droAna3.scaffold_13266 17415068 56 - 19884421
UUAGUUGUUUUCGCUGGUUGCUGGUUGUUGUCGCUGCUGGUGGCACGGAGAGAAAU
.......(((((.(((((..(..((.((....)).))..)..)).))).))))).. ( -17.80, z-score =  -2.04, R)
>consensus
UUGGUUGUUGUCGCUCCACGUUUCUUGUGGCUGCUGC__ACAGCGGAAAAAAA___
((.(((((....((.(((((.....)))))..)).....))))).))......... ( -9.41 =  -8.58 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:48 2011