| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,855,154 – 10,855,259 |
| Length | 105 |
| Max. P | 0.943223 |
| Location | 10,855,154 – 10,855,259 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 89.25 |
| Shannon entropy | 0.17311 |
| G+C content | 0.49058 |
| Mean single sequence MFE | -35.08 |
| Consensus MFE | -30.16 |
| Energy contribution | -29.48 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10855154 105 + 21146708 CUUUUACAGGCAAAACAAGUUUUGGCUGCCUCUGGCCAUUUAUUGUUGCUGGAGUUUCGAGUCGGAGUUGGAGUUGG-AGUCUCAGUCGAAGCUUGUGGUUGCUGC ........(((((.((((((((((((((.(((..((.((.....)).))..)))((((((.((.......)).))))-))...))))))))))))))..))))).. ( -38.60, z-score = -2.67, R) >droEre2.scaffold_4845 7590629 93 - 22589142 CUUUUACAGGCAAAACAAGUUUCGGCUGCCUGUGGCCAUUUAUUGUUGCUGGAGCUUCGAGUUGGA-------------GUCUCAGUCGAAGUUUGUGGUUGCUGC ........(((((.((((..((((((((((.(..((........))..).)).(((((.....)))-------------))..))))))))..))))..))))).. ( -30.80, z-score = -1.66, R) >droYak2.chr2R 10785337 93 + 21139217 CUUUUACAGGCAAAACAAGUUUCGGCUGCCUCUGGCCAUUUAUUGUUGCUGGAGCUUCGAGUUGGA-------------GUCUCAGUCGAAGUUUGUGGUUGCUGC ........(((((.((((..((((((((.(((..((.((.....)).))..)))((((.....)))-------------)...))))))))..))))..))))).. ( -31.70, z-score = -1.95, R) >droSec1.super_1 8367730 100 + 14215200 CUUUUACAGGCAAAACAAGUUUUGGCUGCCUCUGGCCAUUUAUUGUUGCUGGAGUUUCGAGUCGGA------GUUGGGAGUCUCAGUCGAAGCUUGUGGUUGCUGC ........(((((.((((((((((((((.(((..((.((.....)).))..)))....((.((...------.....)).)).))))))))))))))..))))).. ( -36.40, z-score = -2.46, R) >droSim1.chr2R 9615527 106 + 19596830 CUUUUACAGGCAAAACAAGUUUUGGCUGCCUCUGGCCGUUUAUUGUUGCUGGAGUUUCGAGUCGGAGUCGGAGUUGGGAGUCUCAGUCGAAGCUUGUGGUUGCUGC ........(((((.((((((((((((((.(((..((..(.....)..))..)))(..(((.((.......)).)))..)....))))))))))))))..))))).. ( -37.90, z-score = -2.11, R) >consensus CUUUUACAGGCAAAACAAGUUUUGGCUGCCUCUGGCCAUUUAUUGUUGCUGGAGUUUCGAGUCGGA______GUUGG_AGUCUCAGUCGAAGCUUGUGGUUGCUGC ........(((((.((((((((((((((.(((((((.((.....)).))))))).((((...)))).................))))))))))))))..))))).. (-30.16 = -29.48 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:47 2011