| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,843,814 – 10,843,921 |
| Length | 107 |
| Max. P | 0.942203 |
| Location | 10,843,814 – 10,843,921 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 127 |
| Reading direction | reverse |
| Mean pairwise identity | 69.63 |
| Shannon entropy | 0.49899 |
| G+C content | 0.34207 |
| Mean single sequence MFE | -24.76 |
| Consensus MFE | -13.06 |
| Energy contribution | -13.90 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.942203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10843814 107 - 21146708 --------------------UCCAUGAAGUUGUUAAUAUUUAUAGAAUAAACUAGCGUCUUUAUUCACGUUUUAAGGUACAUUUCGCAGAUGGGCAUUCUUUCUGUAAGUGGGAACUUUAUGGCAUU --------------------.((((((((((.(...(((((((((((......(((((........))))).....(..((((.....))))..).....)))))))))))).)))))))))).... ( -25.40, z-score = -2.23, R) >droSim1.chr2R 9604285 107 - 19596830 --------------------UCCAUGAAGUUUUUAAUAUUUAUAGAAUAAACUAGCGUCUUUAUUCACGUUUUAAGGUACAUUUCGCAGAUGGGCAUUCUUUCUGUAAGUGGGAACUUUAUGGCAUU --------------------.(((((((((((....(((((((((((......(((((........))))).....(..((((.....))))..).....))))))))))).))))))))))).... ( -26.90, z-score = -3.15, R) >droSec1.super_1 8356515 107 - 14215200 --------------------UCAAUGAAGUUUUUAAUAUUUAUAGAAUAAACCAGCGUCUUUAUUCACGUUUUAAGGUACAUUUCGCAGAUGGGCAUUCUUUCUGUGAGUUGAAACUUUAUGGCAUU --------------------...((((((((((....((((((((((...((((((((........)))))....))).......((......)).....)))))))))).))))))))))...... ( -22.20, z-score = -1.54, R) >droYak2.chr2R 10774120 126 - 21139217 UAGACAAAAAGUUGUACAGCAAAGUGAGGGUUUUAAUAUUCAUAGAAUAAACUACCGUCUUUAUU-ACGUUUUAAGAUAAAUUUCGCAGAUGGGCAUUCCUUCUGUGAGUGCCAACUUUAUGGCAUU ....((.((((((((((........((.(((.....(((((...)))))....))).))......-.................(((((((.((.....)).)))))))))).))))))).))..... ( -28.20, z-score = -1.42, R) >droAna3.scaffold_13266 17403802 98 + 19884421 --------------------UCCCUGAAAUUG--AAUAUGCACAUGACGUACGUUUGGCUGCCU---CGAUUUCAG----AUUCCAUAUAUAUUGAAUUUCUCUCUGUGUAGUGGCUUUAUGAUGCU --------------------...(((((((((--(....((.((.(((....)))))))....)---)))))))))----...(((((((((..((.....))..))))).))))............ ( -21.10, z-score = -1.03, R) >consensus ____________________UCCAUGAAGUUUUUAAUAUUUAUAGAAUAAACUAGCGUCUUUAUUCACGUUUUAAGGUACAUUUCGCAGAUGGGCAUUCUUUCUGUGAGUGGGAACUUUAUGGCAUU .....................(((((((((((....(((((((((((........(((((...........................)))))........))))))))))).))))))))))).... (-13.06 = -13.90 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:45 2011