| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,842,519 – 10,842,575 |
| Length | 56 |
| Max. P | 0.988580 |
| Location | 10,842,519 – 10,842,575 |
|---|---|
| Length | 56 |
| Sequences | 11 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 96.95 |
| Shannon entropy | 0.06224 |
| G+C content | 0.34253 |
| Mean single sequence MFE | -9.86 |
| Consensus MFE | -9.87 |
| Energy contribution | -9.96 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.28 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.33 |
| SVM RNA-class probability | 0.988580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10842519 56 + 21146708 UAGACAAUUGAAAUUAAGCACUCCACUUUCAUGCAUAAUUCGCAUGAUUAACGAGG ....................(((.....((((((.......)))))).....))). ( -10.50, z-score = -2.62, R) >droSim1.chr2R 9603014 56 + 19596830 UAGACAAUUGAAAUUAAGCACUCCACUUUCAUGCAUAAUUCGCAUGAUUAACGAGG ....................(((.....((((((.......)))))).....))). ( -10.50, z-score = -2.62, R) >droSec1.super_1 8355243 56 + 14215200 UAGACAAUUGAAAUUAAGCACUCCACUUUCAUGCAUAAUUCGCAUGAUUAACGAGG ....................(((.....((((((.......)))))).....))). ( -10.50, z-score = -2.62, R) >droYak2.chr2R 10772897 56 + 21139217 UAGACAAUUGAAAUUAAGCACUCCACUUUCAUGCAUAAUUCGCAUGAUUAACGAGG ....................(((.....((((((.......)))))).....))). ( -10.50, z-score = -2.62, R) >droEre2.scaffold_4845 7577933 56 - 22589142 UAGACAAUUGAAAUUAAGCACUCCACUUUCAUGCAUAAUUCGCAUGAUUAACGAGA ....................(((.....((((((.......)))))).....))). ( -10.30, z-score = -2.61, R) >droAna3.scaffold_13266 17402727 56 - 19884421 UAGACAAUUGAAAUUAAGUACUCCACUUUCAUGCAUAAUUCGCAUGAUUAACGAGG ....................(((.....((((((.......)))))).....))). ( -10.50, z-score = -2.57, R) >dp4.chr3 13329472 56 + 19779522 UAGACAAUUGAAAUUAAGUACUCCACUUUCAUGCAUAAUUCGCAUGAUUAACGAGG ....................(((.....((((((.......)))))).....))). ( -10.50, z-score = -2.57, R) >droPer1.super_2 743573 56 - 9036312 UAGACAAUUGAAAUUAAGUACUCCACUUUCAUGCAUAAUUCGCAUGAUUAACGAGG ....................(((.....((((((.......)))))).....))). ( -10.50, z-score = -2.57, R) >droWil1.scaffold_180700 3724016 56 - 6630534 UAGACAAUUGAAAUUAAGUACUCCACUUUCAUGCAUAAUUCGCAUGAUUAACGAGG ....................(((.....((((((.......)))))).....))). ( -10.50, z-score = -2.57, R) >droGri2.scaffold_15245 2913482 56 + 18325388 GAGACAAUUGAAAUUAAGUACUCUACUUUCAUACAUAAUUCGCAUGAUUAACGAGA ....................(((.....((((.(.......).)))).....))). ( -3.70, z-score = 0.56, R) >droMoj3.scaffold_6496 9492042 56 - 26866924 GAGACAAUUGAAAUUAAGUACUCUACUUUCAUGCAUAAUUCGCAUGAUUAACGAGG ....................(((.....((((((.......)))))).....))). ( -10.50, z-score = -2.28, R) >consensus UAGACAAUUGAAAUUAAGUACUCCACUUUCAUGCAUAAUUCGCAUGAUUAACGAGG ....................(((.....((((((.......)))))).....))). ( -9.87 = -9.96 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:44 2011