| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,891,819 – 2,891,912 |
| Length | 93 |
| Max. P | 0.709701 |
| Location | 2,891,819 – 2,891,912 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 89.30 |
| Shannon entropy | 0.14265 |
| G+C content | 0.33574 |
| Mean single sequence MFE | -18.77 |
| Consensus MFE | -14.33 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.709701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2891819 93 - 23011544 -GGUAUUU-CCACAAGGGUUGUCCAUUUCUAC--------ACCCAUUUCUAUCCAAAAGAUACAUUUUUCUUAAUUGUUAUUUUAAUUACAGUUGAGUGCCUU -((((...-......((((.((........))--------)))).........................(((((((((..........))))))))))))).. ( -15.90, z-score = -1.58, R) >droSec1.super_5 1050588 95 - 5866729 GGCUAUUUCCCACAAGGGUUGUCACUUUCUAC--------ACCCAUUUGUAUCCGAAAGAUACAUUUUUCUUAAUUGUUAUUUUAAUUACAGUUGAGUGCCUG (((............((((.((........))--------))))...(((((.(....)))))).....(((((((((..........))))))))).))).. ( -21.50, z-score = -2.85, R) >droSim1.chr2L 2852694 101 - 22036055 -GGUAUUU-CCACAAGGGUUGUCACUUUCUACCAUUUCGUACCCAUUUGUAUCCAAAAGAUACAUUUUUCUUAAUUGUUAUUUUAAUUACAGUUGAGUGCCUU -((((...-......((((.....................))))...((((((.....)))))).....(((((((((..........))))))))))))).. ( -18.90, z-score = -2.04, R) >consensus _GGUAUUU_CCACAAGGGUUGUCACUUUCUAC________ACCCAUUUGUAUCCAAAAGAUACAUUUUUCUUAAUUGUUAUUUUAAUUACAGUUGAGUGCCUU .((((..........((((.....................))))...((((((.....)))))).....(((((((((..........))))))))))))).. (-14.33 = -15.00 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:30 2011