| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,825,915 – 10,826,014 |
| Length | 99 |
| Max. P | 0.592836 |
| Location | 10,825,915 – 10,826,014 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 87.35 |
| Shannon entropy | 0.25583 |
| G+C content | 0.49119 |
| Mean single sequence MFE | -21.69 |
| Consensus MFE | -12.57 |
| Energy contribution | -14.19 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.592836 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10825915 99 + 21146708 ACCACCAUACCACAUAGCUCGAGUUUACACAAAGAAAACGCCCGAGGAUCUCAACCUUUACGAGUCCAUGAGGCAGCGAAAGCAGCAACAACAGCUGCA ................(((...((((.(.....).))))(((((.(((.(((.........)))))).)).))))))....(((((.......))))). ( -24.10, z-score = -3.10, R) >droSim1.chr2R 9585010 99 + 19596830 ACCACCAUACCACAUAGCACGAGUUUACACAAAGAAAACGCCCGAGGAUCUCAACCUUUACGAGUCCAUGAGGCAGCGAAAGCAGCAGCAACAGCUGCA ......................((((.(.....).))))(((((.(((.(((.........)))))).)).))).((....)).(((((....))))). ( -26.60, z-score = -4.05, R) >droSec1.super_1 8339177 99 + 14215200 ACCACCAUACCACAUAGCACGAGUUUACACAAAGAAAACGCCCGAGGAUCUCAACCUUUACGAGUCCAUGAGGCAGCGAAAGCAGCAGCAACAUCUGCA ......................((((.(.....).))))(((((.(((.(((.........)))))).)).))).((....)).((((......)))). ( -22.40, z-score = -2.73, R) >droYak2.chr2R 10756159 99 + 21139217 ACCACCAUACCACAUAGCUCGAGUUUACACUAAGAAAACGCCCGAGGAUCUUAACCUUUACGAGUCCAUGAGGCAGCGAAAGCAGCAGCAACAGCUGCA .........((.(((.(((((.((((.(.....).))))....((((.......))))..)))))..))).))..((....)).(((((....))))). ( -26.40, z-score = -3.30, R) >droEre2.scaffold_4845 7561764 99 - 22589142 ACCACCAUACCACAUAGCACGAGUUUACACUAAGAAAACGCCCGAGGAUCUUAACCUUUACGAGUCCAUGAGGCAGCGAAAGCAGCAACAACAGCUGCA ................((....((((.(.....).))))(((((.(((.(((.........)))))).)).))).))....(((((.......))))). ( -21.70, z-score = -2.60, R) >droPer1.super_2 727973 99 - 9036312 GCCACCCUACCAUAUAGCUAGAGUAUAUACCAAGAAAACGCCAGAGGAUCUUAAUCUCUACGAGUCCAUGAGACAGCGCAAGCAACAGCAGCAGCAGCU ................(((...................((..(((((.......))))).)).(((.....))).((....))...)))(((....))) ( -14.40, z-score = 0.94, R) >droWil1.scaffold_180700 3704038 94 - 6630534 ACCGCCAUAUCAUAUAGCUCGUGUUUAUACCAAGAAAUCCCCCGAGGAUCUAACCCUCUAUGAGUCCAUGCGCCAGCGUAAGCAACAGCAAUUG----- ................(((..(((((((...............((((.......))))...........((....)))))))))..))).....----- ( -16.20, z-score = -0.97, R) >consensus ACCACCAUACCACAUAGCUCGAGUUUACACAAAGAAAACGCCCGAGGAUCUCAACCUUUACGAGUCCAUGAGGCAGCGAAAGCAGCAGCAACAGCUGCA ................((....((((.(.....).))))(((((.(((.(((.........)))))).)).))).))....(((((.......))))). (-12.57 = -14.19 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:43 2011