| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,813,362 – 10,813,452 |
| Length | 90 |
| Max. P | 0.570889 |
| Location | 10,813,362 – 10,813,452 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 62.51 |
| Shannon entropy | 0.62170 |
| G+C content | 0.52483 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -9.34 |
| Energy contribution | -11.38 |
| Covariance contribution | 2.03 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10813362 90 - 21146708 -CUGCAGGCAGCGAAGAUUGUUGAAGAUUGU-------AGCCCGUAGCCUGCAGACUGUAGACUGUAGAGUGCAGACCG--------------AGCAAGACGCGUUUGCAGU -((((((((.(((..((((......))))..-------....))).))))))))((((((((((((....(((......--------------.)))..))).))))))))) ( -33.30, z-score = -3.18, R) >droSim1.chr2R 9572418 90 - 19596830 -CUGCAGGCAGCGAAGAUUGUUGAAUAUUGU-------AGCCUGCAGACUGCAGACUGCAGAUUGUAGACUGCAAACCG--------------AGCAAGACGCAGUUGCAGC -((((((((.((((..(((....))).))))-------.)))))))).((((((.((((...((((.............--------------.))))...)))))))))). ( -32.74, z-score = -2.44, R) >droSec1.super_1 8326638 90 - 14215200 -CUGCAGGCAGCGAAGAUUGUUGAAGAUUGU-------AGCCUGCAGACUGCAGACUGCAGAUUGUAGAGUGCAAACCG--------------AGCAAGACGCAGUUGCAGC -((((((((.((((.............))))-------.)))))))).((((((.((((...((((.(.((....))).--------------.))))...)))))))))). ( -34.32, z-score = -2.93, R) >droYak2.chr2R 10742773 111 - 21139217 -CAGCAGGCAGCGAAGAUUGUUCAAGAUUGUAGACUGUAGCCUGAAGGCUGUAGCCUGUAGACUGCAGAGUGCAGGCUGUAGAGUGCAGGCAGAGCAAGACGCAGUUGCAGU -..((((.(.(((....((((((..............(((((....)))))..(((((((..((((((........))))))..))))))).))))))..))).)))))... ( -41.20, z-score = -1.65, R) >droEre2.scaffold_4845 7549197 77 + 22589142 --UGCAGGCAGCGAAGAUUGUUGCAGAUUGC----UGAAGAUUGUAGACUGUAGCCCGCAGACUGUAGAGUGCAGACUG-------------CAGU---------------- --(((((...(((......(((((((.((((----........)))).))))))).)))...((((.....)))).)))-------------))..---------------- ( -23.60, z-score = -0.99, R) >droAna3.scaffold_13266 17374952 79 + 19884421 GUAGGCCGCAGCUCGAAGUCCCGAAGCCUCA-------AGCCUGAAGAUUGCAGACUCCAGACAAAGGCAAAAAGACUUC----------CACAGC---------------- ..........(((.((((((.....((((..-------.(.(((.((........)).))).)..)))).....))))))----------...)))---------------- ( -15.90, z-score = 0.49, R) >consensus _CUGCAGGCAGCGAAGAUUGUUGAAGAUUGU_______AGCCUGAAGACUGCAGACUGCAGACUGUAGAGUGCAGACCG______________AGCAAGACGCAGUUGCAG_ .((((((((..............................)))))))).(((((..((((.....))))..)))))..................................... ( -9.34 = -11.38 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:42 2011