| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,808,996 – 10,809,047 |
| Length | 51 |
| Max. P | 0.671818 |
| Location | 10,808,996 – 10,809,047 |
|---|---|
| Length | 51 |
| Sequences | 8 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 80.54 |
| Shannon entropy | 0.36300 |
| G+C content | 0.36647 |
| Mean single sequence MFE | -7.45 |
| Consensus MFE | -5.55 |
| Energy contribution | -5.84 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10808996 51 + 21146708 AGUUAAACGAAUGUGUCCCGCCUCUUAAUUGGCUAAAUACAUUGUUAUAUC---------- .....(((.(((((((...(((........)))...)))))))))).....---------- ( -11.00, z-score = -3.04, R) >droSim1.chr2R 9567937 51 + 19596830 AAUUGAACGAAUGUGCCCCGCCUCUUAAUUGGCUAAAUACAUUGUUAUAUC---------- .....(((.((((((....(((........)))....))))))))).....---------- ( -9.40, z-score = -2.28, R) >droSec1.super_1 8322238 51 + 14215200 AAUUGAACGAAUGUGCCCCGCCUCUUAAUUGGCUAAAUACAUUGUUAUAUC---------- .....(((.((((((....(((........)))....))))))))).....---------- ( -9.40, z-score = -2.28, R) >droEre2.scaffold_4845 7544842 51 - 22589142 AGUUAAACGAAUGUGCCCCGCCUCUUAAUUGGUUAAAUACAUUGUUAUAUC---------- .....(((.((((((....(((........)))....))))))))).....---------- ( -7.70, z-score = -1.28, R) >droYak2.chr2R 10738407 51 + 21139217 AGUUAAAUGAAUGUGCCCCGCCUCUUAAUUGGUUAAAUACGUUGUUAUAUC---------- .........((((((....(((........)))....))))))........---------- ( -6.00, z-score = -0.54, R) >droAna3.scaffold_13266 17370706 61 - 19884421 AGCUGAAUGAAUGUACCCCGCCUCCUAAUUGGAUAAAUACAUUGUUAUAUGAUUAAAUUUC .........((((((.....((........)).....)))))).................. ( -5.80, z-score = -0.09, R) >dp4.chr3 13297636 55 + 19779522 AGAUAAAUGAACCAGCCCCGCCUCUUAAUUGGCCAAAUACAUUGUUACAAACGAG------ ...................(((........)))........((((.....)))).------ ( -4.40, z-score = 0.14, R) >droPer1.super_2 711753 55 - 9036312 AGAUAAAUGAACCAGCCCCGCCUCUUAAUUGGCCAAAUACAUUGUUAUAAAUGAG------ ...................(((........)))......((((......))))..------ ( -5.90, z-score = -0.51, R) >consensus AGUUAAACGAAUGUGCCCCGCCUCUUAAUUGGCUAAAUACAUUGUUAUAUC__________ .....(((.((((((....(((........)))....)))))))))............... ( -5.55 = -5.84 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:41 2011