| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,793,930 – 10,793,985 |
| Length | 55 |
| Max. P | 0.595172 |
| Location | 10,793,930 – 10,793,985 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 64.55 |
| Shannon entropy | 0.58128 |
| G+C content | 0.38549 |
| Mean single sequence MFE | -10.20 |
| Consensus MFE | -5.46 |
| Energy contribution | -5.65 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.78 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.595172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10793930 55 + 21146708 ACGCACUCAACGAAUGCAGUCUGUUGUAUGAGAGCAAAUAGAGAAAUUUAUGAGC ..((.((((.....(((((....))))))))).))..(((((....))))).... ( -9.90, z-score = -0.34, R) >droEre2.scaffold_4845 7530426 55 - 22589142 ACACACUCCACUCAUGCAGUCCGCUGUAUGGGAGCAUUUAGAGAAAUAUAUGGCC .....((((...(((((((....)))))))))))(((.((......)).)))... ( -13.20, z-score = -0.93, R) >droYak2.chr2R 10723481 55 + 21139217 ACAUACUCCACUCAUGCAGUCUGGUUUAUGAGAGCAAAUAGAGAAAUUUAUGGCC .((((..(((..(.....)..)))..))))...((..(((((....))))).)). ( -9.50, z-score = -0.24, R) >droAna3.scaffold_13266 17354812 52 - 19884421 ---AACUCCAUGAGUGUAUUUCUAUUAGCACAAAAAUUAAAUAUAAUUUAUGGCC ---....((((((((((((((..(((........))).)))))).)))))))).. ( -8.20, z-score = -1.64, R) >consensus ACACACUCCACGAAUGCAGUCCGAUGUAUGAGAGCAAAUAGAGAAAUUUAUGGCC ..........(((((((((....)))))))))....................... ( -5.46 = -5.65 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:39 2011