| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,771,626 – 10,771,764 |
| Length | 138 |
| Max. P | 0.959093 |
| Location | 10,771,626 – 10,771,764 |
|---|---|
| Length | 138 |
| Sequences | 4 |
| Columns | 141 |
| Reading direction | forward |
| Mean pairwise identity | 75.52 |
| Shannon entropy | 0.38444 |
| G+C content | 0.28648 |
| Mean single sequence MFE | -28.93 |
| Consensus MFE | -13.40 |
| Energy contribution | -16.96 |
| Covariance contribution | 3.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.959093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10771626 138 + 21146708 GAUCAAACUUGGAGAGCUUUAUAUACUACAUAUAAUUGCAAUGCAACAAGCAUUACACUUCAUCCAAAAGCUUUCCCAUGAGAUCUAAGG---UUUUUUUUUUAAUUUUUAACAAAUAGAGAAAAAAUGUGACGCUUUAAA ((((......((((((((((.((((.....))))..((.(((((.....))))).)).........)))))))))).....))))..(.(---(((((((((((.((......)).)))))))))))).)........... ( -26.10, z-score = -2.12, R) >droEre2.scaffold_4845 7516730 133 - 22589142 GAUCAUACCAGGAGAGCUAUGUAUACUA----UAUUUGCAUUACAAAAUGAAUUGCACUGUAGUCAAAAGCUUUCCUAUGAGAUCGAAG----UUUUUUUUGUAAUUCCUCUAAAAAAAAGUAAAAAUAUUUUGCUAAACA ((((.((..(((((((((......((((----((..((((.............)))).))))))....))))))))).)).))))....----.((((((((.........))))))))((((((.....))))))..... ( -26.32, z-score = -1.98, R) >droYak2.chr2R 10709474 136 + 21139217 GAUCAUACUUGGAGAGCUUUGUAUACUA----UAACUGCAUUACACUUUGUAUUGCACUGUAGCCAAAAGCUUUCCUAUGAGAAUUAAUUCUUUUUUUUUUCUAAUUCCUC-AAAAAAAAGAGAAUUUCAUUUGCUAAAAA ..(((((...((((((((((.....(((----((..((((.(((.....))).)))).)))))...)))))))))))))))((((.(((((((((((((((..........-)))))))))))))))..))))........ ( -35.90, z-score = -5.09, R) >droSim1.chr2R 9540426 134 + 19596830 GAUCAAACUUGGAGAGCUUUAUGUACUA----UAAUUGCUAAGCAACAUGCAUUAGACGUUAUCCAAAAGCUUUCCCAUGAAAUCUAAGG---UUUUUUUUUUAAUUUUUAACAAAUAGAGAAAAAAUCUUUCGCUUAAAA ..........((((((((((.((....(----((((..((((((.....)).))))..))))).))))))))))))..........((((---(((((((((((.((......)).))))))))))))))).......... ( -27.40, z-score = -2.28, R) >consensus GAUCAAACUUGGAGAGCUUUAUAUACUA____UAAUUGCAAUACAACAUGCAUUACACUGUAGCCAAAAGCUUUCCCAUGAGAUCUAAGG___UUUUUUUUUUAAUUCCUAAAAAAAAAAGAAAAAAUCUUUCGCUAAAAA ((((......((((((((((................((((((((.....)))))))).........)))))))))).....))))........(((((((((((.....)))))))))))..................... (-13.40 = -16.96 + 3.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:34 2011