| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,752,200 – 10,752,258 |
| Length | 58 |
| Max. P | 0.752877 |
| Location | 10,752,200 – 10,752,258 |
|---|---|
| Length | 58 |
| Sequences | 10 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 66.58 |
| Shannon entropy | 0.65559 |
| G+C content | 0.61876 |
| Mean single sequence MFE | -22.61 |
| Consensus MFE | -9.45 |
| Energy contribution | -9.00 |
| Covariance contribution | -0.45 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.752877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10752200 58 + 21146708 CAGCUGCCGGCUGAUCAUCGUACCUGGGCGAUCCAUCGGUAUGCGGUGAGCCCGCAGA--------- ...((((.((((.(((..(((((((((.....)))..)))))).))).)))).)))).--------- ( -25.70, z-score = -1.81, R) >droGri2.scaffold_15112 3489228 60 - 5172618 -------CUGCUGCUCCUCGUAGCGUGGUUCACCAUCGCUGCGUGGCGAGCCUGUGGCAUGCUGAUG -------.((((((((((((((((((((....))).))))))).)).))))....))))........ ( -24.80, z-score = -1.58, R) >droVir3.scaffold_12875 13795983 54 - 20611582 ----CAUCAGUUGCUCCUCGUAACGUGGCUCACCAUCGCUGCGCGGCGAACUGGAGGC--------- ----.........((((((((..((..((........))..))..))))...))))..--------- ( -18.10, z-score = -0.74, R) >droWil1.scaffold_180745 498358 67 + 2843958 CCGCUGUCGGUUGCUCAUCAUAUCUGGGUGAGCCAUCGCUGCGUGGCGAGCCCACUUCACGAUGAAG ..((........))(((((.....(((((..(((((......)))))..)))))......))))).. ( -22.00, z-score = -0.46, R) >droPer1.super_4 3249694 58 - 7162766 CCUGUAUUGGCUGAUCCUCAUAUCUAGGGGAGCCGUCGCUGCGUGGCGAGCCAGAGGA--------- (((...((((((..(((((.......)))))..((((((...))))))))))))))).--------- ( -21.30, z-score = -0.63, R) >dp4.chr3 15137985 58 + 19779522 CCUGUAUUGGCUGAUCCUCAUAUCUAGGGGAGCCGUCGCUGCGUGGCGAGCCAGAGGA--------- (((...((((((..(((((.......)))))..((((((...))))))))))))))).--------- ( -21.30, z-score = -0.63, R) >droEre2.scaffold_4845 7498952 58 - 22589142 CAACUGCGGGCUGAUCGUCGUACCUGGGCGAUCCAUCGCUGUGCGGCGAGCCCAUAGA--------- ...(((.((((...(((((((((...(((((....)))))))))))))))))).))).--------- ( -28.10, z-score = -2.86, R) >droYak2.chr2R 10689895 58 + 21139217 CAGCUGACGGCUGCUCAUCGUACCUGGGCGAUCCAUCGCUAUGCGGUGAGCCCAUUGA--------- .(((.....)))((((((((((....(((((....))))).)))))))))).......--------- ( -23.20, z-score = -1.86, R) >droSec1.super_1 8274806 58 + 14215200 CAGCUGCCGGCUGAUCAUCGUACCUGGGCGAUCCAUCGCUAUGCGGUGAGCCCGAAGU--------- ..(((..(((....((((((((....(((((....))))).))))))))..))).)))--------- ( -20.80, z-score = -0.75, R) >droSim1.chr2R_random 2356435 58 + 2996586 CAGCUGCCGGCUGAUCAUCGUACCUGGGCGAUCCAUCGCUAUGCGGUGAGCCCGAAGU--------- ..(((..(((....((((((((....(((((....))))).))))))))..))).)))--------- ( -20.80, z-score = -0.75, R) >consensus CAGCUGCCGGCUGAUCAUCGUACCUGGGCGAUCCAUCGCUGCGCGGCGAGCCCGAAGA_________ ........(((...............((....)).(((((....))))))))............... ( -9.45 = -9.00 + -0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:33 2011