| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,749,680 – 10,749,743 |
| Length | 63 |
| Max. P | 0.925575 |
| Location | 10,749,680 – 10,749,743 |
|---|---|
| Length | 63 |
| Sequences | 10 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 70.44 |
| Shannon entropy | 0.59260 |
| G+C content | 0.48748 |
| Mean single sequence MFE | -14.20 |
| Consensus MFE | -7.76 |
| Energy contribution | -7.63 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10749680 63 - 21146708 ACUUUUACCUCUGCCCGAGGACGAGAUCUCCAUACACAGCAGCGGUAAGUUUCUAAACCUUUA------- ...((((((.((((....(((.(....)))).......)))).))))))..............------- ( -12.60, z-score = -1.31, R) >droMoj3.scaffold_6496 13413050 63 - 26866924 AUUGCUUCCGCUGCCAGAAGAUGAGAUAUCCAUAUUAAGUAGCGGUAAGUAGCCAUCUCUCUA------- .(((((((((((((...((.(((.(....)))).))..))))))).))))))...........------- ( -17.20, z-score = -2.14, R) >droWil1.scaffold_180745 495692 70 - 2843958 AUUGCUGCCCCUUCCAUUGGAUGAGAUCUCUAUCAAUAGUAGCGGUAAGUGUAAUUCAGUAAAACAAAUA .(((((((..((.....((((.(....))))).....))..)))))))...................... ( -11.80, z-score = -0.50, R) >droPer1.super_4 3247148 53 + 7162766 ACUGCUGCCGUUGCCCGAGGAUGAGAUAUCCAUCAACAGCAGCGGUAAGUGUG----------------- ((((((((.((((.....(((((...)))))..)))).)))))))).......----------------- ( -19.60, z-score = -2.80, R) >dp4.chr3 15135439 53 - 19779522 ACUGCUGCCGUUGCCCGAGGAUGAGAUAUCCAUCAACAGCAGCGGUAAGUGUG----------------- ((((((((.((((.....(((((...)))))..)))).)))))))).......----------------- ( -19.60, z-score = -2.80, R) >droAna3.scaffold_13266 5350354 57 - 19884421 ACUUUUGCCUCUUCCCGACGAUGAGAUCUCCAUACACAGCAGCGGUAAGUAUCUUAA------------- ...((((((.((........(((.(....)))).......)).))))))........------------- ( -6.16, z-score = 0.84, R) >droEre2.scaffold_4845 7496439 62 + 22589142 GCUUUUACCUCUGCCCGAGGACGAGAUCUCCAUUCACAGCAGCGGUAAGUUAUCCAAAACCA-------- ...((((((.((((..(((((.(....))))..))...)))).)))))).............-------- ( -13.50, z-score = -1.52, R) >droYak2.chr2R 10687377 62 - 21139217 GCUUUUGCCUCUGCCCGAGGACGAGAUCUCCAUUCACAGCAGCGGUAAGUUUGCAAACACCA-------- ((.((((((.((((..(((((.(....))))..))...)))).))))))...))........-------- ( -16.30, z-score = -1.22, R) >droSec1.super_1 8272298 63 - 14215200 GCUUUUACCUCUGCCCGAGGACGAGAUCUCCAUACACAGCAGCGGUAAGUUUCCAAACCUGUG------- ...((((((.((((....(((.(....)))).......)))).))))))..............------- ( -12.60, z-score = -0.46, R) >droSim1.chr2R 9519387 63 - 19596830 GCUUUUACCUCUGCCCGAGGACGAGAUCUCCAUACACAGCAGCGGUAAGUUUCCAAACCUGUA------- ...((((((.((((....(((.(....)))).......)))).))))))..............------- ( -12.60, z-score = -0.55, R) >consensus ACUUUUGCCUCUGCCCGAGGACGAGAUCUCCAUACACAGCAGCGGUAAGUUUCCAAACCU_U________ .....((((.((((........((....))........)))).))))....................... ( -7.76 = -7.63 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:32 2011