| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,749,516 – 10,749,622 |
| Length | 106 |
| Max. P | 0.680634 |
| Location | 10,749,516 – 10,749,622 |
|---|---|
| Length | 106 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 70.68 |
| Shannon entropy | 0.64342 |
| G+C content | 0.62015 |
| Mean single sequence MFE | -47.57 |
| Consensus MFE | -14.90 |
| Energy contribution | -15.23 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 10749516 106 + 21146708 -------CUGC-UCCAACUCGUCCGCCUCAUUGGCGGGCAGGGAGAGCGAGGUCACCGAUGCUGGCCGCUCGAUGGUGGCCGGCGAGGCUGACGAGCCGAUGGUGUGUGUUUGA -------.(((-((...(..(((((((.....)))))))..)..)))))....(((((.(((((((((((....))))))))))).((((....))))..)))))......... ( -53.20, z-score = -2.34, R) >droSim1.chr2R 9519224 106 + 19596830 -------CUGC-UCCACCUCGUCCGCCUCAUUGGCGGGCAGUGAGAGCGAGGUCACCGAUGCUGGCCGCUCGAUGGUGGCCGGCGAGGCUGACGAGCCGAUGGUGUGUGUUUGA -------....-...((((((((((((.....))))))).((....)))))))(((((.(((((((((((....))))))))))).((((....))))..)))))......... ( -55.00, z-score = -2.92, R) >droSec1.super_1 8272135 106 + 14215200 -------CUGC-UCCACCUCGUCCGCCUCAUUGGCGGGCAGGGAGAGCGAGGUCACCGAUGCUGGCCGCUCGAUGGUGGCCGGCGAGGCUGACGAGCCGAUGGUGUGUGUUUGA -------.(((-((..(((.(((((((.....))))))))))..)))))....(((((.(((((((((((....))))))))))).((((....))))..)))))......... ( -57.70, z-score = -3.26, R) >droYak2.chr2R 10687213 106 + 21139217 -------CUGC-UCCACCUCGUCUGCCUCAUUGGCGGGCAGGGAGAGCGAGGUCACCGAUGCUGGCCGCUCGAUGGUCGCCGGCGAAGCGGACGAGCCGAUGGUGUGUGUUUGA -------.(((-((..(((.(((((((.....))))))))))..)))))....(((((..(((.((((((((.(((...))).)).))))).).)))...)))))......... ( -47.60, z-score = -0.72, R) >droEre2.scaffold_4845 7496275 106 - 22589142 -------CUGC-UCCACCUCGUCCGCCUCAUUGGCGGGCAGGGAGAGCGAGGUCACCGAUGCUGGCCGCUCGAUGGUGGCCGGCGAGGCUGACGAGCCGAUGGUGUGUGUUUGA -------.(((-((..(((.(((((((.....))))))))))..)))))....(((((.(((((((((((....))))))))))).((((....))))..)))))......... ( -57.70, z-score = -3.26, R) >droAna3.scaffold_13266 5350194 106 + 19884421 -------CGGC-UCCAGGUCGUCCGCCUCGUUGGCGGGUAAUGACAGGGAUAGCACUGAUGCCGGUCUCUCGAUUGUGGUCGGCGAGGCCGACGAGGCGAUGGUCUGCGUUUGU -------.(((-..(((..((((.(((((((((((.........(((........))).(((((..(.(......).)..)))))..)))))))))))))))..))).)))... ( -50.10, z-score = -2.25, R) >dp4.chr3 15135273 111 + 19779522 GUGUCCGCGGCCUCCAGCUCAUCGUCGUU---GGCUGGAAGAGUGAGCGAGGCCACCGAAGCUGGUCGCUCUAUAGUAGCCGGCGAGGGCGAGGAUCCAAUCGUUUGGGUUUGU .....(((((((((..((((((..((...---.....))...)))))))))))).((...((((((..((....))..))))))..))))).((((((((....)))))))).. ( -47.90, z-score = -1.68, R) >droPer1.super_4 3246982 111 - 7162766 GUGUCCGCGGCCUCCAGCUCAUCGUCGUU---GGCUGGAAGAGUGAGCGAGGCCACCGAAGCUGGUCGCUCUAUAGUAGCCGGCGAGGGCGAGGAUCCAAUCGUUUGGGUUUGU .....(((((((((..((((((..((...---.....))...)))))))))))).((...((((((..((....))..))))))..))))).((((((((....)))))))).. ( -47.90, z-score = -1.68, R) >droWil1.scaffold_180745 495530 91 + 2843958 --------------------AUUCUCAAC---AUCCUCAUCCCCGAGCGAGGCUACCGAUGCCGGUCGCUCUAGGGUGGCUGGUGAAGCCGAGGAGCCAAUGGUUUGAGUCUGU --------------------...(((((.---.(((((((((..(((((((((.......)))..))))))..))))((((.....)))))))))(((...))))))))..... ( -36.00, z-score = -1.51, R) >droVir3.scaffold_12875 13793215 109 - 20611582 -UGGCUCCAGU-UCCAGAUCAUCCUCAUU---AGCCGUCAUAGAAAGCGAUGUUACCGAGGCGGGACGCUCCAUGGUUACCGGCGAGGCGGUUGAAUCGAUGGUCUGGGUUUGA -......(((.-.((((((((((....((---(((((((........((.......)).(.((((((........))).))).)..)))))))))...))))))))))..))). ( -37.60, z-score = -0.48, R) >droMoj3.scaffold_6496 13412884 109 + 26866924 -UGGCUCCAGU-UCCAGCUCAUCGUCAUU---GGCUGGCAAUGAGAGAGAUGUCACCGAGGCUGGACGCUCCAGCGUAGCUGGCGAUGCAGUCGAAUCGAUGGUAUGGGUUAAU -((((.(((..-.((((((((((((((((---((.(((((..........))))))))).(((((.....))))).....)))))))).)))........)))..))))))).. ( -36.70, z-score = 0.05, R) >droGri2.scaffold_15112 3486006 112 - 5172618 -GGACUCCAGU-UCCAGUUCAUCCUCAUUCGCAGCUGGCAAUGAGAGCGAUGCCACCGAAGCGGGACGCUCCAGCGUUGCCGGCGACGCAGAUGAUUCAAUGGUUUGCGUUUGC -(((((.....-...)))))..........(((((((((((((.(((((.(.((........)).))))))...))))))))))(((((((((.((...)).)))))))))))) ( -43.50, z-score = -1.72, R) >consensus _______CUGC_UCCAGCUCAUCCGCCUC_UUGGCGGGCAGGGAGAGCGAGGUCACCGAUGCUGGCCGCUCGAUGGUGGCCGGCGAGGCCGACGAGCCGAUGGUGUGUGUUUGA ..................(((((.((.((...(((................)))......((((((.((......)).)))))))).)).)))))................... (-14.90 = -15.23 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:31 2011