| Sequence ID | dm3.chr2R |
|---|---|
| Location | 10,726,808 – 10,726,893 |
| Length | 85 |
| Max. P | 0.500000 |
| Location | 10,726,808 – 10,726,893 |
|---|---|
| Length | 85 |
| Sequences | 12 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 97.59 |
| Shannon entropy | 0.04857 |
| G+C content | 0.33037 |
| Mean single sequence MFE | -18.20 |
| Consensus MFE | -15.60 |
| Energy contribution | -15.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 10726808 85 - 21146708 ACAACAAUAUGUGAAUAUGUUAUUUGUUCGGGGAAUUGUGAAAAUCUCAACAGGUCCCCGCACUUUGCAUAUUAUUUUUAAUACG .............(((((((.....((.((((((.((((((.....)).)))).)))))).))...)))))))............ ( -21.60, z-score = -2.73, R) >droSim1.chr2R 9496068 85 - 19596830 ACAACAAUAUGUGAAUAUGUUAUUUGUUCGGGGAAUUGUGAAAAUCUCAACAGGUCCCCGCACUUUGCAUAUUAUUUUUAAUACG .............(((((((.....((.((((((.((((((.....)).)))).)))))).))...)))))))............ ( -21.60, z-score = -2.73, R) >droSec1.super_1 8249301 85 - 14215200 ACAACAAUAUGUGAAUAUGUUAUUUGUUCGGGGAAUUGUGAAAAUCUCAACAGGUCCCCGCACUUUGCAUAUUAUUUUUAAUACG .............(((((((.....((.((((((.((((((.....)).)))).)))))).))...)))))))............ ( -21.60, z-score = -2.73, R) >droYak2.chr2R 10663722 85 - 21139217 ACAACAAUAUGUGAAUAUGUUAUUUGUUCUGGGAAUUGUGAAAAUCUCAACAGGUCCCCGCACUUUGCAUAUUAUUUUUAAUACG .....((((((((((((.......))))).((((.((((((.....)).)))).))))........)))))))............ ( -16.00, z-score = -1.05, R) >droEre2.scaffold_4845 7471521 85 + 22589142 ACAACAAUAUGUGAAUAUGUUAUUUGUUCUGGGAAUUGUGAAAAUCUCAACAGGUCCCCGCACUUUGCAUAUUAUUUUUAAUACG .....((((((((((((.......))))).((((.((((((.....)).)))).))))........)))))))............ ( -16.00, z-score = -1.05, R) >droAna3.scaffold_13266 8978252 85 - 19884421 ACAACAAUAUGUGAAUAUGUUAUUUGUUCUGGGAAUUGUGAAAAUCUCAACAGGUCCCCGCACUUUGCAUAUUAUUUUUAAUAUA .....((((((((((((.......))))).((((.((((((.....)).)))).))))........)))))))............ ( -16.00, z-score = -0.94, R) >dp4.chr3 4955027 84 - 19779522 -CAACAAUAUGUGAAUAUGUUAUUUGUUCGGGGAAUUGUGAAAAUCUCAACAGGUCCCCGCACUUUGCAUAUUAUUUUUAAUACG -............(((((((.....((.((((((.((((((.....)).)))).)))))).))...)))))))............ ( -21.60, z-score = -2.86, R) >droPer1.super_2 5148057 84 - 9036312 -CAACAAUAUGUGAAUAUGUUAUUUGUUCGGGGAAUUGUGAAAAUCUCAACAGGUCCCCGCACUUUGCAUAUUAUUUUUAAUACG -............(((((((.....((.((((((.((((((.....)).)))).)))))).))...)))))))............ ( -21.60, z-score = -2.86, R) >droWil1.scaffold_181141 977458 84 + 5303230 -CAACAAUAUGUGAAUAUGUUAUUUGUUUUGGGAAUUGUGAAAAUCUCAACAGGUCCCCGCACUUUGCAUAUUAUUUUUAAUACG -............(((((((....(((...((((.((((((.....)).)))).)))).)))....)))))))............ ( -15.60, z-score = -0.95, R) >droVir3.scaffold_12875 7973961 84 + 20611582 -CAACAAUAUGUGAAUAUGUUAUUUGUUUUGGGAAUUGUGAAAAUCUCAACAGGUCCCCGCACUUUGCAUAUUAUUUUUAAUACG -............(((((((....(((...((((.((((((.....)).)))).)))).)))....)))))))............ ( -15.60, z-score = -0.95, R) >droMoj3.scaffold_6496 6961733 84 + 26866924 -CAACAAUAUGUGAAUAUGUUAUUUGUUUUGGGAAUUGUGAAAAUCUCAACAGGUCCCCGCACUUUGCAUAUUAUUUUUAAUACG -............(((((((....(((...((((.((((((.....)).)))).)))).)))....)))))))............ ( -15.60, z-score = -0.95, R) >droGri2.scaffold_15245 7724186 84 - 18325388 -CAACAAUAUGUGAAUAUGUUAUUUGUUUUGGGAAUUGUGAAAAUCUCAACAGGUCCCCGCACUUUGCAUAUUAUUUUUAAUACC -............(((((((....(((...((((.((((((.....)).)))).)))).)))....)))))))............ ( -15.60, z-score = -0.82, R) >consensus _CAACAAUAUGUGAAUAUGUUAUUUGUUCUGGGAAUUGUGAAAAUCUCAACAGGUCCCCGCACUUUGCAUAUUAUUUUUAAUACG .............(((((((....(((...((((.((((((.....)).)))).)))).)))....)))))))............ (-15.60 = -15.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:23:28 2011